Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N07
         (1159 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   6.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +1

Query: 541 PPRXXPXXXPRPPPXPXAPXAPXPP*XXPXPAXPXPP 651
           P    P   P P   P AP    PP     P    PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 23.0 bits (47), Expect = 5.1
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
 Frame = +1

Query: 979  PPRXPHAXSPXPPPXXXPP-PAAXXPXAPPPXA 1074
            P   PH  SP  P    PP P+   P   PP A
Sbjct: 23   PQPSPHQ-SPQAPQRGSPPNPSQGPPPGGPPGA 54



 Score = 22.6 bits (46), Expect = 6.8
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = +1

Query: 973  TXPPRXPHAXSPXPPPXXXPPPAAXXPXAPP-PXAXXXARXPRXXXPXPSPT 1125
            T   + P + +P P P     P A    +PP P        P    P  +P+
Sbjct: 10   TQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 575 GRGXXXGXXRGGGXGRG 525
           GRG   G  +GG  GRG
Sbjct: 79  GRGKGRGHGKGGSRGRG 95


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 823 PPXXXPXPPPPXPXPP 870
           PP   P PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 6.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 844 PPPPXPXPPP 873
           PP P P PPP
Sbjct: 338 PPKPAPPPPP 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 1019 RRXRPPPPPXXP 1054
            R+ +PPPPP  P
Sbjct: 1351 RQQQPPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,504
Number of Sequences: 438
Number of extensions: 8251
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39283326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)