Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_N03
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    40   4e-04
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    30   0.39 
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    28   1.6  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   2.7  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   4.8  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    27   4.8  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    27   4.8  
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    26   6.3  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +2

Query: 218 PDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGRKYGLA-GANDEEAFEIDQNVEFLH 388
           P +   +P G+ P++V DG  Y +S AI  +L RKYG +   ++E+  E+++   ++H
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMH 97


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 367 VDLEGLLVIGPGEPVLAAEVPADGGA 290
           VD++GL    PG+P+     PADG A
Sbjct: 719 VDIDGLTTFAPGKPLTLVVHPADGSA 744


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 368 QNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVY 478
           Q+V+FL + +  +  V YE ++ L AK   +   NVY
Sbjct: 65  QSVQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVY 101


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 247 TERSLWLEVRPVSGEHAVVFEVLASVGEQHTAALPESLASEVM 119
           T R L    R ++   +V  EV ASV EQ T +LP    S  M
Sbjct: 774 TSRELASSDRNINTGTSVASEVSASVSEQSTVSLPREKMSVFM 816


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +2

Query: 443 AKKHE-DFSKNVYPDMLKKLNSIVEANKGHIAAGKLTWGDFVFTSMFDYLKTMLQIPDLE 619
           AK  E DF +   PD + KLN +  +N+ H         + +   + +       IP   
Sbjct: 400 AKSQEFDFFEAKIPDSIAKLNELTASNENHYELKTYDRAERLRQKIQEVSSNKRLIPST- 458

Query: 620 VQYPAFKKVLQSVLTQPKVKAFLDL 694
              P  KK + +VL   K  A  DL
Sbjct: 459 ---PPTKKPINAVLDAAKNSAAKDL 480


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +2

Query: 302 CRYLGRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEEL--KAKKHEDFSKNV 475
           C Y G KY + G ++   +E+      +  I     A  +  +E       ++++  + +
Sbjct: 112 CLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGKHYAEYDNLKQKL 171

Query: 476 YPDMLKKLNSIVEANK 523
           Y D+L KL +     K
Sbjct: 172 YEDLLPKLKTATPPQK 187


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +2

Query: 302 CRYLGRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEEL--KAKKHEDFSKNV 475
           C Y G KY + G ++   +E+      +  I     A  +  +E       ++++  + +
Sbjct: 112 CLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGKHYAEYDNLKQKL 171

Query: 476 YPDMLKKLNSIVEANK 523
           Y D+L KL +     K
Sbjct: 172 YEDLLPKLKTATPPQK 187


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 305 RYLGRKY-GLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVYP 481
           ++ GRK   +   + + A ++ +  E L         ++Y+  + L  + H +FS  V  
Sbjct: 146 KFFGRKVININQMHQDMAVDVPEGFELLGSTEDCEFQIFYKPRQALTFQGHPEFSTEVVN 205

Query: 482 DMLKKL 499
            M+K L
Sbjct: 206 TMVKVL 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,397
Number of Sequences: 5004
Number of extensions: 51808
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)