Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_M24
(933 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 39 0.006
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.17
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.17
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.17
Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical pr... 33 0.29
AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical ... 33 0.29
AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical ... 33 0.29
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 33 0.39
Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical pr... 32 0.67
Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical pr... 31 0.89
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 31 1.2
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 31 1.6
U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical pr... 31 1.6
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 1.6
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 1.6
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 1.6
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical pr... 30 2.1
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 2.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 29 3.6
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 29 3.6
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 29 4.8
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 29 4.8
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 29 6.3
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ... 29 6.3
AF025471-4|AAB71063.1| 151|Caenorhabditis elegans Hypothetical ... 29 6.3
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 6.3
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z82284-1|CAB05287.1| 226|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.3
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 28 8.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.3
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 8.3
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 8.3
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 38.7 bits (86), Expect = 0.006
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +2
Query: 119 LCWLWPTLKTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHI---TW 289
LC+LW L T T T T T+ + T T++++ TTT +TTV + T
Sbjct: 179 LCYLWVPLTTTTT--TTTTTTTTTSPMNTTTTTVLINGTTTTTVPTNETTTTVPLNGTTT 236
Query: 290 TLPKADLTSSLPLS 331
T+P + T++ PL+
Sbjct: 237 TVPTNETTTTSPLN 250
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/72 (31%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Frame = +2
Query: 482 RXXXPHXXHPTPPXXRRPXP-----SPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQX 646
R P P PP + P SPP A P T P PPP A
Sbjct: 229 RQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGS 288
Query: 647 XPXXRQTXPPPP 682
P R PPPP
Sbjct: 289 PPPPRAGSPPPP 300
Score = 31.5 bits (68), Expect = 0.89
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Frame = +2
Query: 494 PHXXHPTPPXXRRPXP-----SPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQXXPXX 658
P P PP P P SPP A P S P + PPP P
Sbjct: 267 PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPT-GSLPPPQAGGSPPPAG 325
Query: 659 RQTXPPPP 682
+ PPPP
Sbjct: 326 TGSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/72 (31%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Frame = +2
Query: 482 RXXXPHXXHPTPPXXRRPXP-----SPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQX 646
R P P PP + P SPP A P T P PPP A
Sbjct: 250 RQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGS 309
Query: 647 XPXXRQTXPPPP 682
P R PPPP
Sbjct: 310 PPPPRAGSPPPP 321
Score = 31.5 bits (68), Expect = 0.89
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Frame = +2
Query: 494 PHXXHPTPPXXRRPXP-----SPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQXXPXX 658
P P PP P P SPP A P S P + PPP P
Sbjct: 288 PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPT-GSLPPPQAGGSPPPAG 346
Query: 659 RQTXPPPP 682
+ PPPP
Sbjct: 347 TGSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/72 (31%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Frame = +2
Query: 482 RXXXPHXXHPTPPXXRRPXP-----SPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQX 646
R P P PP + P SPP A P T P PPP A
Sbjct: 235 RQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGS 294
Query: 647 XPXXRQTXPPPP 682
P R PPPP
Sbjct: 295 PPPPRAGSPPPP 306
Score = 31.5 bits (68), Expect = 0.89
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Frame = +2
Query: 494 PHXXHPTPPXXRRPXP-----SPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQXXPXX 658
P P PP P P SPP A P S P + PPP P
Sbjct: 273 PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPT-GSLPPPQAGGSPPPAG 331
Query: 659 RQTXPPPP 682
+ PPPP
Sbjct: 332 TGSPPPPP 339
>Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 33.1 bits (72), Expect = 0.29
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 157 VVENADSGNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 297
+VE+ D GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 40 LVESVDDGNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 33.1 bits (72), Expect = 0.29
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 157 VVENADSGNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 297
+VE+ D GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 40 LVESVDDGNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical
protein Y81G3A.1 protein.
Length = 243
Score = 33.1 bits (72), Expect = 0.29
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 157 VVENADSGNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 297
+VE+ D GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 40 LVESVDDGNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 32.7 bits (71), Expect = 0.39
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 167 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSL 322
T TQ+ T+ TT ++ +P TTT E AT T T LPK L L
Sbjct: 117 TTTQKPTTSTTTTTTSTTPVPTTTTTTEAATTTVLTT-TTEELPKQQLAGRL 167
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = +2
Query: 167 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLS 331
T T+E T T+ P TTT T T T T P T+ PL+
Sbjct: 325 TTTEEATTTTEEITTTTTKAPTTTTTQSTTTTTQLPTTTTTTEPTTTTTTVDPLA 379
>Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical
protein F35E2.5 protein.
Length = 575
Score = 31.9 bits (69), Expect = 0.67
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 134 PTLKTPLR*WKTLTQETA--TNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKAD 307
PT L T T+ TA T + T ART+ P TTT + + T L TT+ + + D
Sbjct: 368 PTTSLALETTTTATRTTAKITAVATVARTNTTQPPTTTPLSSTTALPTTLTSSSSTESTD 427
Query: 308 LTSS 319
+S+
Sbjct: 428 GSST 431
>Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical
protein F33E2.7 protein.
Length = 174
Score = 31.5 bits (68), Expect = 0.89
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 167 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS-SLPLSLV 337
T T T T TT T+ P TTT T T +TT T T P T+ S PL+ V
Sbjct: 89 TTTTTTPTTTTTTPTTTTTTPTTTTTTPTTT--TTTPTTTTTTPTTTTTTRSTPLTEV 144
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Frame = +2
Query: 527 RRPXPSPPXXXAXRXPHXLXTHXSXPX-----LVTXPPPXXAXQXXPXXRQTXPPPPXXS 691
R+P PS P PH + P L PP P T PPPP S
Sbjct: 53 RKPPPSLPPSTMPPGPHGMPFMGGPPPHHQYHLQYPPPHGLGPPPPPPHYYTQPPPPPQS 112
Query: 692 GHH 700
G++
Sbjct: 113 GYY 115
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +2
Query: 173 TQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLP 298
T T T TT+ T+ P TTT T STT T T P
Sbjct: 61 TTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTP 102
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 167 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLP 298
T T T+T TT T TTT T T +T T T+P
Sbjct: 86 TPTTTTSTTSTTTTTTPTTTTSTTTTTTTTTTTATPTTTTTTMP 129
>U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical
protein C30G12.1 protein.
Length = 469
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +2
Query: 164 KTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSS 319
KT Q T T + TT RTS +P TTT + + T P D T +
Sbjct: 288 KTNPQITTTTMTTTTRTSTAIPTTTTTPRQISLQTIPFSTTTRQPNFDKTKT 339
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/69 (28%), Positives = 25/69 (36%)
Frame = -1
Query: 681 GGGGXVCRXXGXCCXAXXGGGXVTKXGXDXCVXRXWGXRXAXXXGGDGXGRRXXGGVGWX 502
GG G + G GGG G D WG + GG G ++ GG GW
Sbjct: 227 GGWGGPAQRGGPGAYGGPGGGGQGGYGGDY--GGGWGQQGGGGQGGWGGPQQQQGGGGWG 284
Query: 501 *WGXXXRXG 475
G + G
Sbjct: 285 QQGGGGQGG 293
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/69 (28%), Positives = 25/69 (36%)
Frame = -1
Query: 681 GGGGXVCRXXGXCCXAXXGGGXVTKXGXDXCVXRXWGXRXAXXXGGDGXGRRXXGGVGWX 502
GG G + G GGG G D WG + GG G ++ GG GW
Sbjct: 189 GGWGGPAQRGGPGAYGGPGGGGQGGYGGDY--GGGWGQQGGGGQGGWGGPQQQQGGGGWG 246
Query: 501 *WGXXXRXG 475
G + G
Sbjct: 247 QQGGGGQGG 255
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/69 (28%), Positives = 25/69 (36%)
Frame = -1
Query: 681 GGGGXVCRXXGXCCXAXXGGGXVTKXGXDXCVXRXWGXRXAXXXGGDGXGRRXXGGVGWX 502
GG G + G GGG G D WG + GG G ++ GG GW
Sbjct: 227 GGWGGPAQRGGPGAYGGPGGGGQGGYGGDY--GGGWGQQGGGGQGGWGGPQQQQGGGGWG 284
Query: 501 *WGXXXRXG 475
G + G
Sbjct: 285 QQGGGGQGG 293
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/63 (34%), Positives = 26/63 (41%)
Frame = +2
Query: 137 TLKTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS 316
T TP +T T+ T TT T P TTT T T + T T T K T+
Sbjct: 255 TTTTPTTTTQTTTKPT-----TTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTT 309
Query: 317 SLP 325
S P
Sbjct: 310 STP 312
>Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 170 LTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSL 322
L ET TT T+ +P TTT+ T T +T T T A T+++
Sbjct: 300 LPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +2
Query: 131 WP----TLKTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTV 277
WP T+ P T T +T +TT T P TTT TA +TT+
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350
>Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 170 LTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSL 322
L ET TT T+ +P TTT+ T T +T T T A T+++
Sbjct: 300 LPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +2
Query: 131 WP----TLKTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTV 277
WP T+ P T T +T +TT T P TTT TA +TT+
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/64 (28%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Frame = +2
Query: 494 PHXXHPTPPXXRRPXPSPPXXXAXRXPHXLXTHXSXPXLVTXP-PPXXAXQXXPXXRQTX 670
P TPP +P P PP P S P PP P
Sbjct: 459 PSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPP 518
Query: 671 PPPP 682
PPPP
Sbjct: 519 PPPP 522
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/63 (26%), Positives = 18/63 (28%)
Frame = +2
Query: 509 PTPPXXRRPXPSPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQXXPXXRQTXPPPPXX 688
P PP R P PP R P T P P PPPP
Sbjct: 139 PPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPRL 198
Query: 689 SGH 697
+ H
Sbjct: 199 NSH 201
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 167 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHIT--WTLPKADLTSSLP 325
T + T T TT T+ P TTT T T +TT+ T T P T++ P
Sbjct: 299 TESTTTETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTTQTTTPTTTATTTKP 353
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 167 TLTQETATNLLTTARTSLILPKTTTLMETATNL-STTVHITWTLPKADLTSS 319
T T T TT TS P TTT T T STT T T+ T++
Sbjct: 292 TTPTTTTTESTTTETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTTQTTT 343
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 494 PHXXHPTPPXXRRPXPSPP 550
P P+PP RRP PSPP
Sbjct: 84 PMRPSPSPPRRRRPSPSPP 102
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/54 (25%), Positives = 17/54 (31%)
Frame = +2
Query: 533 PXPSPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQXXPXXRQTXPPPPXXSG 694
P P PP P + + P + PPP PPPP G
Sbjct: 765 PPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPPPPGG 818
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/54 (25%), Positives = 17/54 (31%)
Frame = +2
Query: 533 PXPSPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQXXPXXRQTXPPPPXXSG 694
P P PP P + + P + PPP PPPP G
Sbjct: 765 PPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPPPPGG 818
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = +2
Query: 149 PLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPL 328
PLR T+ T+T+ TT + P TTT + + T STT T T PK ++S
Sbjct: 576 PLRKVSTVPPTTSTSSTTTQK-----PSTTTTVPSTTPTSTTT-TTTTTPKPTTSTSTST 629
Query: 329 S 331
S
Sbjct: 630 S 630
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = +2
Query: 149 PLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPL 328
PLR T+ T+T+ TT + P TTT + + T STT T T PK ++S
Sbjct: 576 PLRKVSTVPPTTSTSSTTTQK-----PSTTTTVPSTTPTSTTT-TTTTTPKPTTSTSTST 629
Query: 329 S 331
S
Sbjct: 630 S 630
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 161 WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWT 292
WK T TT + + PK TTL +T T +T+ T T
Sbjct: 134 WKKFTTTEEPLETTTTKRIITTPKRTTLRKTTTTTTTSTTSTST 177
>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
protein R06B10.1 protein.
Length = 1236
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +1
Query: 172 DSGNGYEPIDNRPYIVNPPKDYNPNGNGY--EPIDNGAYY---VDPPQ 300
D+ N Y+P++ +VNP K + NG+ + + + A Y VDPP+
Sbjct: 824 DNANAYKPMNPIEMVVNPTKYAKKSSNGFMEKVVKDIAEYPKPVDPPK 871
>AF025471-4|AAB71063.1| 151|Caenorhabditis elegans Hypothetical
protein R52.6 protein.
Length = 151
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 167 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTL 295
TL E T ++TT TS + K M AT + WTL
Sbjct: 47 TLPYEETTEMMTTMETSTMTEKVCPEMPAATACMDLTTLGWTL 89
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/67 (28%), Positives = 19/67 (28%)
Frame = +2
Query: 509 PTPPXXRRPXPSPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQXXPXXRQTXPPPPXX 688
P PP P PS P T P V P P P PPPP
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPPPPPPLP 1397
Query: 689 SGHHXXP 709
S P
Sbjct: 1398 SEEKKNP 1404
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = +2
Query: 512 TPPXXRRPXPSPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQXXPXXRQTXPPPP 682
TPP +P P PP P S PPP P PPPP
Sbjct: 458 TPPTTPKPAPPPPSRIPNPSPSPQPAEVSKS---PPPPPPLPPIATPSSVPPPPPPP 511
>Z82284-1|CAB05287.1| 226|Caenorhabditis elegans Hypothetical
protein T27E7.1 protein.
Length = 226
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +1
Query: 163 ENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPPQGRPYFKPT--PF 330
+N G + P N + N P + GY P PP+G Y++P P+
Sbjct: 34 QNPQPGASFPP--NMNPVTNGPGSWTQKPGGYNNGPGSGSFKSTKPPRGLVYYQPKNYPY 91
Query: 331 PGARGGK 351
+GGK
Sbjct: 92 KPGKGGK 98
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 167 TLTQETATNLLTT----ARTSLILPKTTTLMETATNLSTTVHITWTLP-KADLTSSLP 325
T T +T+T + TT T+ PK TT ETAT S+T +T P T++LP
Sbjct: 497 TTTVQTSTTVPTTPSKTTATTTTTPKPTT-TETATTSSSTTTVTTQKPTTVTSTTTLP 553
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 167 TLTQETATNLLTT----ARTSLILPKTTTLMETATNLSTTVHITWTLP-KADLTSSLP 325
T T +T+T + TT T+ PK TT ETAT S+T +T P T++LP
Sbjct: 338 TTTVQTSTTVPTTPSKTTATTTTTPKPTT-TETATTSSSTTTVTTQKPTTVTSTTTLP 394
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/58 (29%), Positives = 19/58 (32%)
Frame = +2
Query: 509 PTPPXXRRPXPSPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQXXPXXRQTXPPPP 682
P PP P PP R P P + PPP + P PPPP
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTP-------GPPGMPGMPPPPPPSRFGPPGMGGMPPPP 337
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 167 TLTQETATNLLTT----ARTSLILPKTTTLMETATNLSTTVHITWTLP-KADLTSSLP 325
T T +T+T + TT T+ PK TT ETAT S+T +T P T++LP
Sbjct: 378 TTTVQTSTTVPTTPSKTTATTTTTPKPTT-TETATTSSSTTTVTTQKPTTVTSTTTLP 434
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/60 (26%), Positives = 17/60 (28%)
Frame = +2
Query: 515 PPXXRRPXPSPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQXXPXXRQTXPPPPXXSG 694
PP P P P P P + PPP P PPPP G
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/60 (26%), Positives = 17/60 (28%)
Frame = +2
Query: 515 PPXXRRPXPSPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQXXPXXRQTXPPPPXXSG 694
PP P P P P P + PPP P PPPP G
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/58 (29%), Positives = 19/58 (32%)
Frame = +2
Query: 509 PTPPXXRRPXPSPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQXXPXXRQTXPPPP 682
P PP P PP R P P + PPP + P PPPP
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTP-------GPPGMPGMPPPPPPSRFGPPGMGGMPPPP 347
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/60 (26%), Positives = 17/60 (28%)
Frame = +2
Query: 515 PPXXRRPXPSPPXXXAXRXPHXLXTHXSXPXLVTXPPPXXAXQXXPXXRQTXPPPPXXSG 694
PP P P P P P + PPP P PPPP G
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/69 (27%), Positives = 24/69 (34%)
Frame = -1
Query: 681 GGGGXVCRXXGXCCXAXXGGGXVTKXGXDXCVXRXWGXRXAXXXGGDGXGRRXXGGVGWX 502
GG G + G GGG G WG + GG G ++ GG GW
Sbjct: 189 GGWGGPAQRGGPGAYGGPGGGGQGGYGGGN-YGGGWGQQGGGGQGGWGGPQQQQGGGGWG 247
Query: 501 *WGXXXRXG 475
G + G
Sbjct: 248 QQGGGGQGG 256
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/69 (27%), Positives = 24/69 (34%)
Frame = -1
Query: 681 GGGGXVCRXXGXCCXAXXGGGXVTKXGXDXCVXRXWGXRXAXXXGGDGXGRRXXGGVGWX 502
GG G + G GGG G WG + GG G ++ GG GW
Sbjct: 227 GGWGGPAQRGGPGAYGGPGGGGQGGYGGGN-YGGGWGQQGGGGQGGWGGPQQQQGGGGWG 285
Query: 501 *WGXXXRXG 475
G + G
Sbjct: 286 QQGGGGQGG 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,955,805
Number of Sequences: 27780
Number of extensions: 333978
Number of successful extensions: 1568
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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