Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M23
         (1097 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.22 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   6.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +2

Query: 362 PPPPPQXXXXGXGGFPPXPXPP 427
           PPPPP     G G  PP P PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +2

Query: 356 KXPPPPPQXXXXGXGGFPPXPXPPXRXVXG 445
           K PPPPP           P P PP   + G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMG 759


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 370 PPTTXXXRVXXLPPXPPXPPP 432
           PPT    +   LP  PP PPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPP 244


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 362 PPPPPQXXXXGXGGFPPXPXPP 427
           PPPPP          PP P PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 9/38 (23%)
 Frame = +1

Query: 355 KKXPPPPTTXXXRVXXLPP---------XPPXPPPXRA 441
           KK PPPP     R    PP          PP PPP R+
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRS 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,745,631
Number of Sequences: 5004
Number of extensions: 20191
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 579724962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)