Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M22
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    76   6e-15
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    33   0.041
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    31   0.16 
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    30   0.50 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    29   0.66 
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    29   0.87 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    28   1.5  
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    27   2.7  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    27   3.5  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   8.1  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 76.2 bits (179), Expect = 6e-15
 Identities = 31/49 (63%), Positives = 39/49 (79%)
 Frame = +1

Query: 445 YKGYRRCLRPYPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 591
           YKG   C +    E+G++S WRGN ANV+RYFPTQALNFAFKDK+K++F
Sbjct: 71  YKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQALNFAFKDKFKKMF 119



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = +2

Query: 674 SLCFVYPLDFARTRLAADV--GKGDGQREXSG 763
           SL FVY LD+ARTRLA D    K  G+R+ +G
Sbjct: 146 SLLFVYSLDYARTRLANDAKSAKKGGERQFNG 177



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 762 GLGNWISKIFKSDGLIGLYRRF 827
           GL +   K ++SDGL GLYR F
Sbjct: 177 GLVDVYRKTYRSDGLRGLYRGF 198


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 487 QGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 585
           +GL+ F+RGN  N +R FP  A+ FA  +  KQ
Sbjct: 70  EGLIGFFRGNGTNCLRAFPYGAVQFATFNMLKQ 102


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 445 YKGYRRCLRPYPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 591
           Y G   CL+   K +G    +RG    ++   P +AL FA  D Y +++
Sbjct: 45  YNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW 93



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 686 VYPLDFARTRLAADVGKGD 742
           +YPLD  +TR+   VGK D
Sbjct: 26  LYPLDVVKTRMQLSVGKSD 44


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +1

Query: 301 RSLRNSWAGRVSPPPVSKERPVTTIE 378
           RSLR S  GR   PP S+ER V +IE
Sbjct: 88  RSLRYSSVGRSRSPPPSRERSVRSIE 113


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 324 WAGISAAGLQRTAGNNHRSVSKLLAPKYSTVS 419
           + GI  + LQ+ A   H SV +LL+P + TVS
Sbjct: 674 YQGIGLSALQQIASTRHISVWQLLSPYWPTVS 705


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 707 VRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQHRPRNTCLYLSLKAKLSAWV 543
           + +R G      WL+        +R NA   ++ +H P++ C Y S KA L  WV
Sbjct: 336 ILNRWGQNGFLEWLQDLQNSYTMRR-NALLLAADKHLPKSVCKYHSPKAGLFLWV 389


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = -3

Query: 752 HAGHLPYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQHRPR 591
           H    P R R RD   RS   +RS     R  HR  DY RS   ++   + R R
Sbjct: 140 HQSRSPVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRR 190


>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 756 SPGLGNWISKIFKSDGLIGLYR 821
           SPG+   I  I+K++G+ GLYR
Sbjct: 243 SPGIMQTIMSIYKNNGIKGLYR 264


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +3

Query: 735 REMASVXSPGLG--NWISKIFKSDGLIGLYRRF 827
           +  AS+  P +G  + +  ++KS+GL+GL+R F
Sbjct: 272 KSAASLVKPKIGIRHVLGGLYKSEGLLGLFRGF 304


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 198 DPPSAVCRNSHLDIFTXVKDHINRTKCRNSPIRVAFAKEFLGWAGISAAGLQRTAG 365
           DP S  C ++   ++   KD+ N  KC  + + ++   E L W    AA LQ   G
Sbjct: 72  DPKSQFCWHALAIVYRETKDYNNSLKCYQNALAISPNNESL-W--YDAAYLQAQLG 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,578,683
Number of Sequences: 5004
Number of extensions: 72118
Number of successful extensions: 222
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)