Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M19
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       33   0.005
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 32.7 bits (71), Expect = 0.005
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +2

Query: 536 PPXPXXPPPPXPXXXPPPGGXPPGXXP 616
           P  P    PP P   PPPGG PPG  P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGG-PPGAPP 56



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
 Frame = +2

Query: 695 PPSXXP-PXPXNPRXXXXPXPXGPXAXRXGPPPXP-PXPPPXPXP 823
           P S  P P P   +    P    P     GPPP   P  PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
 Frame = +1

Query: 691 PXPLPXPPXPXQPPXXPXPPXP-RAXXXXXRPSPPPA 798
           P P P P    Q P    PP P +       P  PP+
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 528 PPXPPXPPPPXXPP 569
           PP P   PPP  PP
Sbjct: 39  PPNPSQGPPPGGPP 52



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 536 PPXPXXPPPPXPXXXPPPGGXP 601
           PP P   PPP      PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/37 (27%), Positives = 13/37 (35%)
 Frame = +3

Query: 702 PXPPXXXTTPGPPXXPXPXGPXXXXXALPPXRPXXPP 812
           P  P   + P P   P P GP     +  P +    P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 507 QXXXPPXPPXPPXPPPPXXPPP 572
           Q   PP P   P P  P   PP
Sbjct: 35  QRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 519 PPXPPXPPXPPPPXXP 566
           PP P  PP PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 536 PPXPXXPPPPXPXXXP 583
           PP P  PPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 522 PXPPXPPXPPPPXXPP 569
           P  P PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 782 PPPXPPXPPP 811
           P P PP PPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 682 PPXPXPLPXPPXPXQP 729
           PP P P P PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 785 PPXPPXPPPXP 817
           PP P  PPP P
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 767  AXRXGPPPXPPXPP 808
            A R   PP PP PP
Sbjct: 1349 AWRQQQPPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,996
Number of Sequences: 438
Number of extensions: 8987
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)