Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M18
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.06c |isd11||iron sulfur cluster assembly protein Isd11|...    28   2.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.8  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   6.6  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    26   6.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.6  

>SPBC13G1.06c |isd11||iron sulfur cluster assembly protein
           Isd11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +2

Query: 146 LYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTXTKDSFEIEKKINCGQAEELIIQAEN 325
           LY  IL+T +  P T  YR+YT +  R++   L    D  + E+ I   +    IIQ ++
Sbjct: 11  LYRNILKTSKLFPYT--YREYTIRRTRDKFKELKVESDPAKFEQGIKDSEKLLEIIQRQS 68


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
 Frame = +2

Query: 125 PHHTLGALYGKILRTLQKMPETSVYRKY-----TEQIVRERAAVLTXTKDSFEIEKKINC 289
           P + +  LY   L     +   S +  Y       +++  +  VL+        +K+  C
Sbjct: 357 PKNNIAKLYDPRLHLFFSLRHNSFFESYFIYFFLAKLILLKKTVLSLASTEQANKKQKTC 416

Query: 290 GQAEELIIQAE 322
            Q EEL++QAE
Sbjct: 417 SQIEELLLQAE 427


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 131 HTLGALYGKILRTLQKMPETSV 196
           HT  A Y  I++TLQ +P T V
Sbjct: 276 HTNAATYRVIIQTLQNLPHTKV 297


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 197 YRKYTEQIVRERAAVLTXTKDSFEIEKKINCGQAEELIIQAENEL 331
           Y ++ ++IV+ER      +K   +   K+N G A  L  Q EN+L
Sbjct: 433 YEEHRQKIVKERLEKQRASKIRSQNRPKVNAGLASRLSYQ-ENKL 476


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = +3

Query: 498 PPPPPX--XPLPXPXKXPXXGDXPFXGG 575
           PPPPP    P P P   P     P  GG
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGG 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,422
Number of Sequences: 5004
Number of extensions: 38334
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)