Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_M18
(929 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0783 + 11151007-11151343,11153375-11153530,11153898-11153992 70 3e-12
12_02_1174 - 26696869-26698191 30 2.3
02_05_0686 - 30900748-30902167,30903442-30904742 30 3.0
06_01_0486 - 3455030-3455770 29 4.0
11_06_0188 + 21036465-21036627,21036735-21036883,21037369-210374... 29 7.0
11_01_0621 - 4981070-4981136,4982906-4983825 29 7.0
08_02_1256 + 25645085-25645396 29 7.0
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554... 29 7.0
09_04_0112 - 14757947-14758972 28 9.2
02_04_0021 + 18975992-18976408 28 9.2
>03_02_0783 + 11151007-11151343,11153375-11153530,11153898-11153992
Length = 195
Score = 69.7 bits (163), Expect = 3e-12
Identities = 33/85 (38%), Positives = 44/85 (51%)
Frame = +2
Query: 113 VAANPHHTLGALYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTXTKDSFEIEKKINCG 292
V N L LY + L+ ++ +P+ YRK E R R + D IE +I CG
Sbjct: 33 VVPNAREVLVGLYTRTLKEIEAVPKDEGYRKAVESFTRHRLQICQEEDDWKRIEDRIGCG 92
Query: 293 QAEELIIQAENELXLARKMXNWKPW 367
Q EELI +A++EL L KM W PW
Sbjct: 93 QVEELIEEAQDELKLIAKMIEWDPW 117
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.3 bits (65), Expect = 2.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 717 PLXPXPXPTFXPPPTXXSXPXXPRXP 794
P+ P P P+ PPP P PR P
Sbjct: 143 PVKPQPPPSLPPPPPPPPPPPPPRPP 168
Score = 26.6 bits (56), Expect(2) = 4.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 878 PXWRPPXAPPPXPXXPP 928
P +PP PPP P PP
Sbjct: 183 PSLQPPSPPPPPPTRPP 199
Score = 21.0 bits (42), Expect(2) = 4.7
Identities = 12/44 (27%), Positives = 13/44 (29%)
Frame = +2
Query: 626 PPPPXXXARXXXXLXFSPXXGTPNXXXSRNPSXXPPXTHVXPPT 757
PPPP R P P P PP PP+
Sbjct: 126 PPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPS 169
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +3
Query: 498 PPPPPX--XPLPXPXKXPXXGDXPFXGGVNWGP 590
PPPPP P P P K P P GG GP
Sbjct: 345 PPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGP 377
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 693 PXGXXLVTPLXPXPXPTFXPPPTXXSXP 776
P V P P P P + PPPT S P
Sbjct: 106 PPTPPYVPPYIPPPTPPYVPPPTPPSPP 133
>11_06_0188 +
21036465-21036627,21036735-21036883,21037369-21037484,
21037939-21038101
Length = 196
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 562 GXSPXXGXFXGXGRGXXGGGGG 497
G G F G GRG GGGGG
Sbjct: 22 GGGGRGGRFGGGGRGGRGGGGG 43
>11_01_0621 - 4981070-4981136,4982906-4983825
Length = 328
Score = 28.7 bits (61), Expect = 7.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 498 PPPPPXXPLPXPXKXP 545
PPPPP PLP P P
Sbjct: 127 PPPPPPHPLPPPPPTP 142
>08_02_1256 + 25645085-25645396
Length = 103
Score = 28.7 bits (61), Expect = 7.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 498 PPPPPXXPLPXPXKXP 545
PPPPP PLP P P
Sbjct: 62 PPPPPPPPLPSPPPPP 77
>03_02_0784 -
11154395-11154888,11155284-11155360,11155447-11155497,
11155599-11155672,11156127-11156215,11156533-11156618,
11157570-11157669,11158540-11158622,11158776-11159194
Length = 490
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 498 PPPPPXXPLPXPXKXPXXGDXPF 566
PPPPP P P P P G F
Sbjct: 428 PPPPPPPPPPPPQALPLPGSYNF 450
>09_04_0112 - 14757947-14758972
Length = 341
Score = 28.3 bits (60), Expect = 9.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 878 PXWRPPXAPPPXPXXPP 928
P + PP +PPP P PP
Sbjct: 287 PPFNPPTSPPPPPPPPP 303
>02_04_0021 + 18975992-18976408
Length = 138
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +3
Query: 711 VTPLXPXPXPTFXPP-PTXXSXPXXPRXPGXXAXXHG 818
+TP P P PT PP PT P P A HG
Sbjct: 95 LTPPPPKPKPTPPPPAPTPKPPAPSPSPPPPKAAGHG 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,748,823
Number of Sequences: 37544
Number of extensions: 372842
Number of successful extensions: 4335
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3697
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -