Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M18
         (929 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68493-1|CAA92789.1|  150|Caenorhabditis elegans Hypothetical pr...   107   1e-23
AC006744-2|AAF60505.2|  503|Caenorhabditis elegans Cytochrome p4...    33   0.38 
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    30   2.7  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    30   2.7  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U97017-2|AAB52359.1|  281|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    26   6.8  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    26   7.0  
Z82076-7|CAB04933.2|  291|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z68493-1|CAA92789.1|  150|Caenorhabditis elegans Hypothetical
           protein C33A12.1 protein.
          Length = 150

 Score =  107 bits (257), Expect = 1e-23
 Identities = 47/100 (47%), Positives = 66/100 (66%)
 Frame = +2

Query: 113 VAANPHHTLGALYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTXTKDSFEIEKKINCG 292
           V  +PH  L  +YG+ILR L+++P  + YRKYTE +V++R A++    D  ++E+KI  G
Sbjct: 50  VNEHPHRALTVVYGRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDIKKLEEKIGMG 109

Query: 293 QAEELIIQAENELXLARKMXNWKPWEPLMAKPPKGQWEWP 412
           Q EE+I QAE EL   R + + K WEPL+   PKGQW WP
Sbjct: 110 QIEEVIEQAEYELETTRAIVDSKAWEPLVESAPKGQWSWP 149


>AC006744-2|AAF60505.2|  503|Caenorhabditis elegans Cytochrome p450
           family protein 29A3 protein.
          Length = 503

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +2

Query: 116 AANPHHTLGALYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTXTKDSFEIEKKINCGQ 295
           A NPHH + A+Y  +    +K    ++ + +T  ++ ER       ++S E+EK+ +   
Sbjct: 224 AMNPHHQIPAIYWALGHQKKKDEYFNIMKTFTRNVIAERRT----ARESGEVEKETSKRN 279

Query: 296 AEELIIQAENE 328
              L I   NE
Sbjct: 280 MNFLDILLSNE 290


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 714 TPLXPXPXPTFXPPPTXXSXPXXP 785
           TP  P P PT  PPP   S P  P
Sbjct: 90  TPPPPPPKPTIRPPPIPASPPPRP 113


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 714 TPLXPXPXPTFXPPPTXXSXPXXP 785
           TP  P P PT  PPP   S P  P
Sbjct: 312 TPPPPPPKPTIRPPPIPASPPPRP 335


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
 Frame = +2

Query: 608 PLHXFXP----PPPXXXARXXXXLXFSPXXGTPNXXXSRNPSXXPPXTHVXP-PT 757
           P H   P    PPP            SP  GTP+      PS  PP T + P PT
Sbjct: 652 PTHYIVPSQSSPPPDPYVISNPIPTLSPTAGTPSFNIYPYPSLPPPTTTISPLPT 706


>U97017-2|AAB52359.1|  281|Caenorhabditis elegans Hypothetical
           protein F47B3.4 protein.
          Length = 281

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 465 PXNSIXTXXXXPPPPPXXP-LPXPXKXPXXGD 557
           P  S+ +    PPPPP  P +P P K P   D
Sbjct: 42  PARSVASSAEPPPPPPPAPKVPEPPKAPPPVD 73


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 26.2 bits (55), Expect(2) = 6.8
 Identities = 16/58 (27%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
 Frame = +2

Query: 605 HPLHXFXPPPPXXXARXXXXLXFSPXXGTPNXXXSRN-PSXXPPXTHVXPPTNXXFXP 775
           H L    PPPP   +         P    PN     N P   PP     PP +    P
Sbjct: 567 HGLAPARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAP 624



 Score = 20.6 bits (41), Expect(2) = 6.8
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 890 PPXAPPPXPXXPP 928
           PP  PPP P   P
Sbjct: 630 PPPPPPPPPMGLP 642


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 26.2 bits (55), Expect(2) = 7.0
 Identities = 16/58 (27%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
 Frame = +2

Query: 605 HPLHXFXPPPPXXXARXXXXLXFSPXXGTPNXXXSRN-PSXXPPXTHVXPPTNXXFXP 775
           H L    PPPP   +         P    PN     N P   PP     PP +    P
Sbjct: 393 HGLAPARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAP 450



 Score = 20.6 bits (41), Expect(2) = 7.0
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 890 PPXAPPPXPXXPP 928
           PP  PPP P   P
Sbjct: 456 PPPPPPPPPMGLP 468


>Z82076-7|CAB04933.2|  291|Caenorhabditis elegans Hypothetical
           protein W07G1.1 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 82  KKDNRSNRI--GSRRKS-ASHFGRPIW*NLTYSPKNARNI 192
           KKD +  +    SRRKS A H G+P W +L+   KN  ++
Sbjct: 249 KKDEKKRKSVSSSRRKSQAQHHGQPNWGDLSSFTKNIESL 288


>Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC376.8 protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 498 PPPPPXXPLPXPXKXPXXGD 557
           PPPPP   +P P K P   D
Sbjct: 53  PPPPPAPKVPEPPKAPPPAD 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,828,873
Number of Sequences: 27780
Number of extensions: 270621
Number of successful extensions: 1617
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)