Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M17
         (1133 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = +3

Query: 345 PPPPPXKHXPPXGXXXPPPXPPTXXAAXXGXPPXPP 452
           P P P  H  P       P  P+      G P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 2.2
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +3

Query: 372 PPXGXXXPPPXPPTXXAAXXGXPPXPPXPXGXTPPPXPPPXP 497
           P  G   P P P     A     P  P P    PP  PP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSP--PNPSQGPPPGGPPGAP 55


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 470 PXPXPPPPP 496
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 464  GXPXPXPPPP 493
            G P P PPPP
Sbjct: 1855 GSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.152    0.556 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,889
Number of Sequences: 438
Number of extensions: 9255
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38319318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)