Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M13
         (921 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   0.72 
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    31   1.5  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    29   4.7  
AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical ...    29   4.7  
U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical pr...    29   6.2  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    29   6.2  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    29   6.2  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   6.2  
Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   8.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   8.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   8.2  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.5 bits (63), Expect(2) = 0.72
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 856 PPXXFXPPTPXPXSPXNPPPXP 921
           PP    PP P P  P  PPP P
Sbjct: 58  PPPMCPPPPPPPPPPMCPPPPP 79



 Score = 21.0 bits (42), Expect(2) = 0.72
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 700 PXXXGPPXPXPPP 738
           P    PP P PPP
Sbjct: 36  PMCAPPPLPCPPP 48


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 856 PPXXFXPPTPXPXSPXNPPPXP 921
           PP    PP P P  P  PPP P
Sbjct: 66  PPPPICPPPPPPPMPCPPPPPP 87


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
           protein 1, isoform d protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -3

Query: 451 GFGXGGXGXGXRXXGAGGXXGXXNXGVXXG 362
           GFG G  G G    G+GG  G  N G   G
Sbjct: 65  GFGGGNGGFGGGGGGSGGGGGGNNIGSLVG 94


>AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical
           protein B0205.10 protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 354 PXTPXXTPXXXSPXXPPAPXXLXPXPXPPXPXP 452
           P  P   P   +P   PAP    P P  P P P
Sbjct: 107 PDAPAAAPVQETPQVAPAPETPAPAPETPAPAP 139


>U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical
           protein ZK354.8 protein.
          Length = 483

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 856 PPXXFXPPTPXPXSPXNPPP 915
           PP    PP P P +P  PPP
Sbjct: 92  PPPSDPPPPPPPVAPHQPPP 111


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 354 PXTPXXTPXXXSPXXPPAPXXLXPXPXPPXPXP 452
           P TP  +P    P  PP+P    P   PP P P
Sbjct: 161 PMTPP-SPQRRPPRTPPSPEPRNPPRTPPSPIP 192


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 838 PLLAXXPPXXFXPPTPXPXSPXNPPPXP 921
           PL    PP    PP P P     PPP P
Sbjct: 79  PLPLSNPPAKPTPPPPPPKPTIRPPPIP 106


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 838 PLLAXXPPXXFXPPTPXPXSPXNPPPXP 921
           PL    PP    PP P P     PPP P
Sbjct: 301 PLPLSNPPAKPTPPPPPPKPTIRPPPIP 328


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +3

Query: 342 NXXKPXTPXXTPXXXSPXXPPAPXXLXPXPXPPXPXPA 455
           N   P  P   P   +P   P P    P P PP P PA
Sbjct: 23  NCATPPCPEPMPVCATP---PCPPQYAPLPPPPMPAPA 57


>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 859 PXXFXPPTPXPXSPXNPPPXP 921
           P    PP P P  P  PPP P
Sbjct: 349 PPIISPPAPPPPPPPPPPPPP 369


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 354 PXTPXXTPXXXSPXXPPAPXXLXPXPXPPXPXP 452
           P  P   P    P  PP P  L P    P P P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP 746


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 354 PXTPXXTPXXXSPXXPPAPXXLXPXPXPPXPXP 452
           P  P   P    P  PP P  L P    P P P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP 746


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 354 PXTPXXTPXXXSPXXPPAPXXLXPXPXPPXPXP 452
           P  P   P    P  PP P  L P    P P P
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP 329


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 372  TPXXXSPXXPPAPXXLXPXPXPPXPXP 452
            +P    P  PP    L P P PP P P
Sbjct: 1337 SPPPPPPPPPPPSDDLTPVPPPPPPPP 1363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,141,153
Number of Sequences: 27780
Number of extensions: 108587
Number of successful extensions: 1413
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)