Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M12
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    29   0.70 
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    26   6.6  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    26   8.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   8.7  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 343 PRSSLKNSPVVTTFTKKSLVALSQSPEDLPSPHFLVPSDK 224
           P+S   +SP   + T+KS V      +++ S HF VP  K
Sbjct: 442 PKSQFSSSPTKESTTRKSEVEPPSPSKEIKSSHFSVPEFK 481


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 328 KNSPVVTTFTKKSLVALSQSPEDLPSPHF 242
           KN PVV  FT+ +L  +   PED+    F
Sbjct: 53  KNQPVVGFFTEDALKMVGTKPEDVMQVSF 81


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 728 FSXXFVGGXEARRRWSKXAR*YXWF 654
           +   FV G + ++RW + A  Y WF
Sbjct: 70  YDDGFVTGKDRQKRWLRNAPPYRWF 94


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 352  VSLPRSSLKNSPVVTTFTKKSLVALSQSPEDLPSPHFLVPS 230
            +S P +    S  ++ +  KSL   + SP  +PS H L+P+
Sbjct: 1374 ISKPFNVHTLSTTLSPWAMKSLAQAAISPNPMPSAHDLLPT 1414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,578
Number of Sequences: 5004
Number of extensions: 48330
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)