Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M12
         (926 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0725 - 20442988-20443180,20443268-20443540,20443642-204438...    32   0.56 
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706...    30   2.3  
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997...    30   2.3  
04_04_0058 - 22416949-22418196                                         29   4.0  

>08_02_0725 -
           20442988-20443180,20443268-20443540,20443642-20443853,
           20443935-20444247,20444334-20444441,20444537-20444643,
           20444743-20444781
          Length = 414

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -2

Query: 310 TTFTKKSLVALSQSPEDLPSPHFLVPSDKVV 218
           TTF +++  A S +PE+LP P  ++  D+VV
Sbjct: 233 TTFRRRTTAAASPAPEELPLPRKILDHDRVV 263


>07_03_0636 +
           20168180-20168462,20168961-20170303,20170401-20170678,
           20170790-20170821,20170908-20171314,20171401-20171847
          Length = 929

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 136 SFYASWLRREVSDHQPIFKVSLTPSRYSRLCHLGQGNGGREGLRD 270
           SF  S+L +E++  +       +PS Y+R   LG GNGG + + D
Sbjct: 708 SFARSYLVQELNIAETRLVPLNSPSDYARALELGSGNGGVDAIID 752


>03_02_0631 +
           9969841-9969868,9969965-9970082,9970186-9970828,
           9971146-9971935,9972002-9972051,9972618-9972704
          Length = 571

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = -2

Query: 361 ACPVSLPRSSLKNSPVVTTFTKKSLVALSQSPEDLPSP 248
           AC  S+ R SLK SPVV+  +++ L   S SP D  SP
Sbjct: 414 ACRSSIDRLSLKGSPVVSGLSQRQL--SSDSPLDKLSP 449


>04_04_0058 - 22416949-22418196
          Length = 415

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 433 SWAQSRRPP*LVLSPXGXNTLVP*ACPVSLPRSS 332
           SW  S  PP ++L+P    +  P ACP + P  S
Sbjct: 23  SWPLSPPPPSVILTPFASPSPAPWACPPAFPAPS 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,771,431
Number of Sequences: 37544
Number of extensions: 427463
Number of successful extensions: 1072
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)