Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M10
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    29   0.65 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      28   1.5  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   3.5  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   6.0  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   8.0  
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    26   8.0  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 367  NGKIYEGAGWNHIGAHTLHYNNISIGIGFIGDFRGEAADPAGTA 498
            N   Y G  W  +   TL+Y  + IGI  I    G A+  +GTA
Sbjct: 1201 NIPFYGGFAWLMLMIFTLYYTTLGIGIATISPSIGTASIISGTA 1244


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 567  GHQQLINTLSPGAVLQSEIESWXHWLDNARKVL 665
            GHQ L+N     A L S+++S+  +++ A + L
Sbjct: 1328 GHQSLLNLREKRAFLDSQLKSYNEYIEQAMETL 1360



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 256 NDCFTDEECLLSVNSLRQHHMRLAGFKDLGYSFV 357
           N  FTDE+  + V  LRQ ++ L  FK L   F+
Sbjct: 162 NLSFTDEDVSIIVRRLRQSNVILPNFKALSADFM 195


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 169 WEFRRIRTLHSGFRNSPRTPTIIETGATNIFATCFRF 59
           W+ RR   +H+    +  TP + +    NIF  C +F
Sbjct: 337 WQHRRDYIVHNNRERNTITPLLSQNDLWNIFFLCTKF 373


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -1

Query: 591 ACLSTAGDQRRGSLQSISYFQPPQAKKSWTACSACWVGSFSPKVANET 448
           ACL  + +  + SLQ I Y    Q   SW        G   PK +N T
Sbjct: 118 ACLLKSKNYIKKSLQEIVYLTNMQPNVSWNVLQEPTRGIKVPKESNNT 165


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
 Frame = +1

Query: 226 DLVVIQHTVSNDCFTDEE---CL----LSVNSLRQHHMR-LAGFKDLGYSFVAG 363
           +L ++ + + NDCFT  E   CL    LS N L +   +    F DL + FV+G
Sbjct: 810 ELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSG 863


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 274 EECLLSVNSLRQHHMRLAGFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNISIGIG 450
           E+ +  V  L+Q + +  G +  G SF       +Y  AGW+HI  + L  +N S   G
Sbjct: 108 EQLVRRVCDLKQGYTQYGGLRPFGVSF-------LY--AGWDHIRGYQLFQSNPSGNYG 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,383
Number of Sequences: 5004
Number of extensions: 68015
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)