Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M10
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.4  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 522 VGVENNLLTEDYHVVGHQQLINTL 593
           VG+ N +    + V+GH+Q  +T+
Sbjct: 177 VGISNEVELPQFRVLGHRQRHSTI 200


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 390 RSFINFSVASSHE*IAQVLE 331
           RSF+ FS+  S + +A+V++
Sbjct: 296 RSFVPFSIERSSQSVAEVMD 315


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 6/29 (20%), Positives = 17/29 (58%)
 Frame = -3

Query: 220 DSSGAVYDVTPCHSIR*WEFRRIRTLHSG 134
           ++ G +YD++    +   E++ ++ +H G
Sbjct: 316 EAEGGIYDISNKRRLGLTEYQAVKEMHDG 344


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 522 VGVENNLLTEDYHVVGHQQ 578
           VGV N +    + V+GH+Q
Sbjct: 177 VGVSNEVSLPQFKVLGHRQ 195


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 522 VGVENNLLTEDYHVVGHQQ 578
           VGV N +    + V+GH+Q
Sbjct: 116 VGVSNEVSLPQFKVLGHRQ 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,395
Number of Sequences: 438
Number of extensions: 4992
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)