Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_M09
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 124 7e-29
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 109 2e-24
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 73 3e-13
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 3.8
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 6.6
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 6.6
03_02_0488 - 8824980-8825267,8825364-8827775 29 6.6
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 124 bits (300), Expect = 7e-29
Identities = 65/131 (49%), Positives = 93/131 (70%), Gaps = 2/131 (1%)
Frame = +1
Query: 79 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 252
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 253 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 432
KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAV 122
Query: 433 YDAILEDLVFP 465
+D ILED+V+P
Sbjct: 123 HDGILEDVVYP 133
Score = 70.1 bits (164), Expect = 2e-12
Identities = 28/54 (51%), Positives = 44/54 (81%)
Frame = +2
Query: 467 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 628
AEIVGKRIR +LDG+++IK+ LD ++ E+K++TF +VY++L G++V FE+P
Sbjct: 134 AEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 109 bits (263), Expect = 2e-24
Identities = 59/113 (52%), Positives = 81/113 (71%), Gaps = 2/113 (1%)
Frame = +1
Query: 133 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 306
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 307 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 465
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+P
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYP 146
Score = 68.5 bits (160), Expect = 7e-12
Identities = 27/54 (50%), Positives = 42/54 (77%)
Frame = +2
Query: 467 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 628
AEIVGKR+R LDG +++K+ LD ++ E+K+DTF SVY++L G++V F++P
Sbjct: 147 AEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 72.9 bits (171), Expect = 3e-13
Identities = 41/91 (45%), Positives = 60/91 (65%)
Frame = +1
Query: 187 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 366
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 367 PSHKTRVANKQKRPRSRTLTSVYDAILEDLV 459
P +K + PR+RTL +V+D ILED+V
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVV 116
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 401 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 285
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 139 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 273
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 139 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 273
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 88 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 264
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 265 KAFQKI 282
+ +++
Sbjct: 359 DSSEEL 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,846,613
Number of Sequences: 37544
Number of extensions: 405634
Number of successful extensions: 938
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -