Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M08
         (973 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0603 - 11150739-11150746,11150791-11151340                       31   1.8  
05_01_0141 - 937428-937717,938483-938705                               30   2.4  
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415...    30   3.2  
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294...    29   7.4  
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    28   9.8  

>09_02_0603 - 11150739-11150746,11150791-11151340
          Length = 185

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 299 RGXFWXPPPXXFSPPXPPG 355
           +G F  PPP  F PP PPG
Sbjct: 32  KGNFALPPPFGFPPPPPPG 50


>05_01_0141 - 937428-937717,938483-938705
          Length = 170

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 308 FWXPPPXXFSPPXPPGEXKNFXXPXRGFXG 397
           ++ PPP  + PP P G    +  P  G+ G
Sbjct: 38  YYPPPPTAYPPPPPAGYGGGYGYPPAGYPG 67


>07_03_0329 +
           16840051-16840917,16840999-16841342,16841444-16841574,
           16841671-16841792,16841877-16841983,16842104-16842236,
           16842342-16842458,16842560-16842667,16842716-16842742,
           16842759-16842830,16843462-16843584,16843671-16843833,
           16844140-16844264,16844355-16844489,16844574-16844677,
           16844772-16844834,16844930-16844993,16845186-16845318,
           16845414-16845487,16845603-16845697,16845799-16845830,
           16846201-16846355
          Length = 1097

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 354 PGGXGGEXXXGGGXQNXPLFXGEKXKGGG 268
           PGG GG    GGG    P + G    GGG
Sbjct: 52  PGGRGGGYGGGGGGGGPPYYGGGGGGGGG 80


>12_02_0998 +
           25126114-25126596,25129213-25129339,25129349-25129459,
           25130122-25130270,25130356-25130643,25130753-25130941,
           25131445-25131619,25132219-25132316
          Length = 539

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +2

Query: 317 PPPXXFSPPXPPGEXKNFXXPXRGFXGGXXFFXKXP 424
           PPP  + PP P G   N      G+ G   F    P
Sbjct: 303 PPPQTWGPPPPWGHPSNVPPGGPGYGGNPQFMPPRP 338


>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
            13676868-13677330,13677855-13678036,13678093-13678235,
            13678315-13678423,13679000-13679456,13680490-13682473,
            13682507-13682626,13682920-13682971
          Length = 1467

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 317  PPPXXFSPPXPPGEXKNFXXPXRGFXG 397
            PPP   +P  PPG   NF  P   + G
Sbjct: 1212 PPPPPIAPLNPPGPHGNFPAPPAPYHG 1238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,215,487
Number of Sequences: 37544
Number of extensions: 251558
Number of successful extensions: 822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2823252340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)