Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M08
         (973 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.9  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.9  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.9  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    29   5.0  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 22/66 (33%), Positives = 22/66 (33%)
 Frame = +2

Query: 317 PPPXXFSPPXPPGEXKNFXXPXRGFXGGXXFFXKXPPRXGX*KXXXXPXXGGGXXPPKX* 496
           PPP   SPP PP        P R   G        PPR         P   GG  PP   
Sbjct: 273 PPPPTGSPPPPPAGGS--PPPPRA--GSPP--PPPPPRGSPPTGSLPPPQAGGSPPPAGT 326

Query: 497 XXXPPP 514
              PPP
Sbjct: 327 GSPPPP 332



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 423 PPAGXXKKXXXXPPXGGGXPPPXXXXFXPP 512
           PP G        PP  GG PPP      PP
Sbjct: 302 PPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 331


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 22/66 (33%), Positives = 22/66 (33%)
 Frame = +2

Query: 317 PPPXXFSPPXPPGEXKNFXXPXRGFXGGXXFFXKXPPRXGX*KXXXXPXXGGGXXPPKX* 496
           PPP   SPP PP        P R   G        PPR         P   GG  PP   
Sbjct: 294 PPPPTGSPPPPPAGGS--PPPPRA--GSPP--PPPPPRGSPPTGSLPPPQAGGSPPPAGT 347

Query: 497 XXXPPP 514
              PPP
Sbjct: 348 GSPPPP 353



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 423 PPAGXXKKXXXXPPXGGGXPPPXXXXFXPP 512
           PP G        PP  GG PPP      PP
Sbjct: 323 PPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 352


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 22/66 (33%), Positives = 22/66 (33%)
 Frame = +2

Query: 317 PPPXXFSPPXPPGEXKNFXXPXRGFXGGXXFFXKXPPRXGX*KXXXXPXXGGGXXPPKX* 496
           PPP   SPP PP        P R   G        PPR         P   GG  PP   
Sbjct: 279 PPPPTGSPPPPPAGGS--PPPPRA--GSPP--PPPPPRGSPPTGSLPPPQAGGSPPPAGT 332

Query: 497 XXXPPP 514
              PPP
Sbjct: 333 GSPPPP 338



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 423 PPAGXXKKXXXXPPXGGGXPPPXXXXFXPP 512
           PP G        PP  GG PPP      PP
Sbjct: 308 PPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 337


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
            protein protein 6 protein.
          Length = 1106

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 308  FWXPPPXXFSPPXPPGEXKNF--XXPXRGFXG 397
            F+ P P  FSPP PP + + F    P  G+ G
Sbjct: 1061 FYPPQPRDFSPPQPPQQSRMFPPSQPPFGYAG 1092


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,271,360
Number of Sequences: 27780
Number of extensions: 136252
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2521399358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)