Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M07
         (1012 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 740 PXXPPPPTPTXXXXXGXXXPXXPPPXPP 823
           P  PPPP P      G   P  PPP PP
Sbjct: 6   PGNPPPPPPPP----GFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 485 PPXXXPPPPPPXXF 526
           PP   PPPPPP  F
Sbjct: 5   PPGNPPPPPPPPGF 18


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +2

Query: 749 PPPPTPTXXXXXGXXXPXXPPPXPPTTXSXXXXPXAXXPR 868
           PPPP P      G   P  PPP PP   +      A  P+
Sbjct: 762 PPPPPPPGVAGAG---PPPPPPPPPAVSAGGSRYYAPAPQ 798



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 752 PPPTPTXXXXXGXXXPXXPPPXP 820
           PPP P      G   P  PPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/42 (28%), Positives = 12/42 (28%)
 Frame = +2

Query: 740  PXXPPPPTPTXXXXXGXXXPXXPPPXPPTTXSXXXXPXAXXP 865
            P  PPPP            P  PP  PP        P    P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/42 (30%), Positives = 14/42 (33%)
 Frame = +2

Query: 740 PXXPPPPTPTXXXXXGXXXPXXPPPXPPTTXSXXXXPXAXXP 865
           P  P PPTP          P  P   PP+  S    P    P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,396
Number of Sequences: 5004
Number of extensions: 21565
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 525259918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)