Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_M05
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.024
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 0.22
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.51
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.51
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 1.6
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 28 2.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 2.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.7
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 34.3 bits (75), Expect = 0.024
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 891 GGGXGGGGGXXGG-GGXPGGWXGXIXGGXXXG 799
GGG GG GG GG GG PGG+ G G G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 32.7 bits (71), Expect = 0.072
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 891 GGGXGGGGGXXGG-GGXPGGWXGXIXG 814
GGG GG G GG GG PGG+ G + G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 888 GGXGGGGGXXGG-GGXPGGWXGXIXGGXXXG 799
GG GG GG GG G PGG+ G GG G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGG-PGGFGGG 250
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 888 GGXGG-GGGXXGGGGXPGGWXGXIXGGXXXG 799
GG GG GGG G GG GG+ G GG G
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGG-PGGFGGG 264
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 891 GGGXGG-GGGXXGGGGXPGGWXG 826
GGG GG GGG G PGG+ G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGG 209
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = -1
Query: 888 GGXGGGGGXXGG----GGXPGGWXGXIXGGXXXG 799
GG GG G GG GG PGG+ G GG G
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGG-PGGFGGG 243
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.2 bits (55), Expect(2) = 0.22
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 879 GGGGGXXGGGGXPGGWXGXIXGG 811
GG G GGG PGG+ GG
Sbjct: 157 GGFGTRTRGGGMPGGFANMFGGG 179
Score = 23.4 bits (48), Expect(2) = 0.22
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 891 GGGXGGGGGXXGG 853
GGG GGG G GG
Sbjct: 136 GGGMGGGMGGMGG 148
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.51
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 831 PTPPXXPPPPXCXPPPXSPP 890
PTPP PPP PPP +PP
Sbjct: 1705 PTPP--PPPMSVPPPPSAPP 1722
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 831 PTPPXXPPPPXCXPPPXSPP 890
P P PPPP P P PP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPP 1728
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.51
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 888 GGXGGGGGXXGGGGXPGGWXGXIXGGXXXG 799
GG GGG GGG GG G GG G
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 891 GGGXGGGGGXXGGGGXPGGWXGXIXGG 811
GGG GG G GG GG+ G GG
Sbjct: 163 GGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 888 GGXGGGGGXXGGGGXPGGWXGXIXGGXXXG 799
GG GG GGG GG+ G GG G
Sbjct: 152 GGFGGNSRGGFGGGSRGGFGGGSRGGSRGG 181
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = -1
Query: 891 GGGXGGGGGXXGG--GGXPGGWXGXIXGGXXXG 799
GG GG GG GG G GG+ G GG G
Sbjct: 141 GGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 837 PPXXPPPPXCXPPPXSPP 890
PP PPPP PP PP
Sbjct: 9 PPPPPPPPGFEPPSQPPP 26
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 831 PTPPXXPPPPXCXPPPXSPP 890
P P PPPP PP PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPP 25
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Frame = +3
Query: 837 PPXXPPP---PXCXPPPXSPP 890
PP PPP P PPP PP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 891 GGGXGGGGGXXGGGGXPGGWXGXIXGG 811
GGG GG G GG G G G GG
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGG 63
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 888 GGXGGGGGXXGG--GGXPGGWXGXIXGG 811
GG GG G GG GG GG G GG
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGGARGG 46
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -1
Query: 891 GGGXGGG-GGXXGGGGXPGGWXGXIXGGXXXG 799
GG GGG GG GG G GG G GG G
Sbjct: 33 GGARGGGRGGARGGRGGRGGARGG-RGGSSGG 63
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 891 GGGXGG--GGGXXGGGGXPGGWXGXIXG 814
GGG GG GGG G G GG G G
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGG 56
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 86 PLVSQRPPLNLHKLTMNFAKILSFVFALVLALRMTSAAPEPRWKIFKKIEKMGRNIRDGI 265
PL+ PP N+ + + + FAL + R+ ++ P+P+ ++ R I D +
Sbjct: 146 PLLLSNPPRNMIGQSQSGTGKTA-AFALTMLSRVDASVPKPQAICLAPSRELARQIMDVV 204
Query: 266 VKAGPAIEV 292
+ G EV
Sbjct: 205 TEMGKYTEV 213
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect(2) = 2.6
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +3
Query: 819 KXXXPTPPXXPPPPXCXPP 875
K P P PPPP PP
Sbjct: 230 KQADPLPAPPPPPPPTLPP 248
Score = 21.0 bits (42), Expect(2) = 2.6
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +3
Query: 849 PPPPXCXPPPXSPP 890
PPPP P PP
Sbjct: 273 PPPPATPSQPPRPP 286
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +3
Query: 792 PWGRXXXXXKXXXPTPPXXPPPPXCXPPPXSPP 890
P G PTPP PP PP +PP
Sbjct: 405 PLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Frame = +3
Query: 837 PPXXPPPPX---CXPPPXSPP 890
PP PPPP PPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,987
Number of Sequences: 5004
Number of extensions: 46892
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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