Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_M01
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.53 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   0.94 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.94 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect(2) = 0.53
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 543 PXXPXTPPPPPXXXXP 590
           P  P  PPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 20.6 bits (41), Expect(2) = 0.53
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 459 SXXPXPPXPPPP 494
           S  P  P PPPP
Sbjct: 335 SDTPPKPAPPPP 346


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
 Frame = +3

Query: 477 PXPPPPXXTIAPXPTPHXXHPXPXXPXTPPPPPXXXXPXPP----RPXPRPXPRXP 632
           P PP P     P   P    P       PP P     P       RP   P PR P
Sbjct: 109 PRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 164


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 14/48 (29%), Positives = 16/48 (33%)
 Frame = +3

Query: 489 PPXXTIAPXPTPHXXHPXPXXPXTPPPPPXXXXPXPPRPXPRPXPRXP 632
           P      P P+P   H  P  P    PP     P P  P   P  + P
Sbjct: 16  PSSGAPGPQPSP---HQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 622 GXGRGXGRGGXGXXXLGGGGGVXG 551
           G G+G G G  G    GG  G  G
Sbjct: 79  GRGKGRGHGKGGSRGRGGNRGRTG 102



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 625 RGXGRGXGRGG 593
           RG GRG G+GG
Sbjct: 80  RGKGRGHGKGG 90


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 863  PPPPPPFP 886
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,132
Number of Sequences: 438
Number of extensions: 3859
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)