Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_L22
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.20 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.20 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.20 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.27 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.36 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   1.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.8  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    26   7.7  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    26   7.7  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +2

Query: 647  PXSXSPKXFXFXXXXPPPXQXPPPXXXPPPGAXXFSAXP 763
            P S +P         PPP   PPP   PP  A   SA P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 28.3 bits (60), Expect(2) = 0.31
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 693  PPPXKXPPPXXPP-PXGRXXSPPP 761
            PP    PPP  PP P G   +PPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 20.6 bits (41), Expect(2) = 0.31
 Identities = 9/33 (27%), Positives = 12/33 (36%)
 Frame = +3

Query: 516  HPGGXWAPKRNFXSPKKXQNXFXPXPPXKXPPP 614
            HP      +    +P +      P PP   PPP
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPP 1717


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 696 PPXKXPPPXXPPPXGRXXSPPPXXXPG 776
           PP   PPP  PP       PPP   PG
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 17/48 (35%), Positives = 17/48 (35%)
 Frame = +3

Query: 693 PPPXKXPPPXXPPPXGRXXSPPPXXXPGXPXRLSXXPGXXXXXPKPPP 836
           PPP    P   P P      PPP    G P      PG     P PPP
Sbjct: 735 PPPAVIVPTPAPAPI---PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.1 bits (62), Expect = 0.82
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 693 PPPXKXPPPXXPPPXGRXXSPPPXXXPGXP 782
           P P    PP  PPP G   + PP   P  P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = +3

Query: 693 PPPXKXPPPXXPPPXGRXXSPPPXXXPGXPXRLSXXPGXXXXXPKPPP 836
           P P   P P  PP       PPP   PG         G     P PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVA-------GAGPPPPPPPP 782


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +3

Query: 696  PPXKXPPPXXPPPXGRXXSPPPXXXPGXPXRLSXXPGXXXXXPKPPP 836
            PP    PP   P  G    PPP   P  P   +  P       K PP
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +3

Query: 693  PPPXKXPPPXXPPPXGRXXSPPPXXXPGXPXRLSXXPGXXXXXPKPP 833
            P P    PP   P  G    PPP   P  P      P        PP
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 19/63 (30%), Positives = 19/63 (30%)
 Frame = +3

Query: 648 PPXFPQXXFXFXXXXPPPXKXPPPXXPPPXGRXXSPPPXXXPGXPXRLSXXPGXXXXXPK 827
           PP  P          PP    P P  PPP      P P   P  P  L   P       K
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSL-PPPAQPAAPVK 182

Query: 828 PPP 836
            PP
Sbjct: 183 SPP 185



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 24/83 (28%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
 Frame = +3

Query: 591 PPXKXPPP*XXXFXXTXTPPPXFPQXXFXFXXXXPP-PXKXPP-PXXPPPXGRXXSPPPX 764
           PP    PP         T  P  P          PP P K PP P   PP  +  + P  
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQ-PAAPVK 182

Query: 765 XXPGXPXRLSXXPGXXXXXPKPP 833
             P  P   S  P      P PP
Sbjct: 183 SPPSAPSLPSAVPPMPPKVPPPP 205



 Score = 22.6 bits (46), Expect(2) = 7.9
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +3

Query: 504 PPXXHPGGXWAPKRNFXSPKKXQNXFXPXPPXKXPPP 614
           PP   P    AP ++  S     +   P PP   PPP
Sbjct: 172 PPPAQPA---APVKSPPSAPSLPSAVPPMPPKVPPPP 205



 Score = 21.4 bits (43), Expect(2) = 7.9
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +3

Query: 696 PPXKXPPPXXPPPXGRXXSPPPXXXP 773
           PP   PPP    P     S P    P
Sbjct: 198 PPKVPPPPLSQAPVANTSSRPSSFAP 223


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/66 (30%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
 Frame = +3

Query: 648 PPXFPQXXFXFXXXXPPPXKXP-PPXXPPPXGRXXSPPPXXXPGXPXRLSXXP--GXXXX 818
           PP  P           P    P PP  PPP     S PP   P     +S  P       
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289

Query: 819 XPKPPP 836
            P PPP
Sbjct: 290 PPLPPP 295



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +2

Query: 695 PPXQXPPPXXXPPPGAXXFSAXPXXPRXPXXPL 793
           P    P P   PPP     S+ P  P  P  P+
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPV 278



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/87 (20%), Positives = 25/87 (28%)
 Frame = +2

Query: 503 PPXXSPRXVLGPQKEFLXPQKXPKPFRPXSXXKXPPPLXXXFXXNXNPPXSXSPKXFXFX 682
           PP   P   +         ++ P P  P    +  PP+      +  PP    P+     
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349

Query: 683 XXXPPPXQXPPPXXXPPPGAXXFSAXP 763
               PP     P   PP  A      P
Sbjct: 350 SIPLPPQGRSAPPPPPPRSAPSTGRQP 376



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 25/100 (25%), Positives = 29/100 (29%), Gaps = 8/100 (8%)
 Frame = +3

Query: 558 PKKXQNXFXPXPPXKXP-----PP*XXXFXXTXTPPPXFPQXXFXFXXXXPP---PXKXP 713
           P + ++   P PP   P     PP          PP   P          PP     +  
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413

Query: 714 PPXXPPPXGRXXSPPPXXXPGXPXRLSXXPGXXXXXPKPP 833
            P  P P     S PP   P  P  L    G     P PP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPM--GAPAAPPLPP 451



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
 Frame = +3

Query: 696 PPXKXP--PPXXPP--PXGRXXSPP----PXXXPGXPXRLSXXPGXXXXXPKPPP 836
           PP   P  PP  PP  P G   +PP        P  P  +   P      P PPP
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 25/96 (26%), Positives = 28/96 (29%)
 Frame = +2

Query: 503 PPXXSPRXVLGPQKEFLXPQKXPKPFRPXSXXKXPPPLXXXFXXNXNPPXSXSPKXFXFX 682
           PP   P      Q   L P +   PF P +    PP           PP   +P      
Sbjct: 461 PPWQQPTQQSAVQPSNLVPSQNA-PFIPGTSAPLPPTTFAPPGVPL-PPIPGAPGMPNLN 518

Query: 683 XXXPPPXQXPPPXXXPPPGAXXFSAXPXXPRXPXXP 790
              PP    PP    PP     F   P  P  P  P
Sbjct: 519 MSQPP--MVPPGMALPPGMPAPFPGYPAVPAMPGIP 552


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 27/85 (31%), Positives = 28/85 (32%), Gaps = 1/85 (1%)
 Frame = -2

Query: 835 GGGLGXXXXXPGXXERRXGXPGXXXG-GGEXXRPXGGGXXGGGXLXGGGXXXXKXKXFWG 659
           GGG G      G      G  G   G GGE     G G  GGG    GG         +G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP---GGFEGGPGG--FG 241

Query: 658 XXGGGVXVXXKXXX*GGGXFXGGXG 584
              GG          G G F GG G
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFGGGPG 266


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/44 (29%), Positives = 15/44 (34%)
 Frame = +3

Query: 693  PPPXKXPPPXXPPPXGRXXSPPPXXXPGXPXRLSXXPGXXXXXP 824
            PPP    P   PP      + PP   P     +S  PG     P
Sbjct: 1884 PPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVP 1927


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/44 (29%), Positives = 15/44 (34%)
 Frame = +2

Query: 641 NPPXSXSPKXFXFXXXXPPPXQXPPPXXXPPPGAXXFSAXPXXP 772
           +PP S  P          P    PPP   PPP     +A    P
Sbjct: 166 SPPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEP 209


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 278 VVTGFTEESIVVLSQSAEDLPSSHFRVPRDVHR 180
           +  G  EE++ VLS+SAE  P S   V  + HR
Sbjct: 211 IQVGKDEEAVRVLSESAELFPDSE-EVQNEYHR 242


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +2

Query: 131 ITKKNTPSEAYFQSDTPGERHVGHENGRREGL----RHFGTERR 250
           + ++N  S ++   D PG  + G E  +REG+     +FGTE++
Sbjct: 42  VFEENEFSLSFLAFDGPGALNHGVERSKREGILELTYNFGTEKK 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,843
Number of Sequences: 5004
Number of extensions: 54014
Number of successful extensions: 231
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)