Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_L17
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.9  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   7.9  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    26   7.9  

>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = -3

Query: 262 PKVTPSQS---TTPSIIIFVISSKIL**RFSFIHNEHYLIIYFHEIYHTRY 119
           P+  PS S   T P I    +  K    +F FIH E +L  YFH      Y
Sbjct: 160 PRPPPSASIEDTYPIIHCLQLFFKWQYAQFLFIHRESFLFEYFHRSNDNMY 210


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 364 FSISALGNGKSYIGGGCI 311
           F IS +GN     GGGCI
Sbjct: 644 FGISGMGNHLQIFGGGCI 661


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 425 ISMLERFEKNLKASEITPKVGSAAQGLAIHGHASDDAMHYEKSSMT*PRHLXTXFIPXV 601
           +SM      N  A+ +     SAA    + GHA+   +H+E+SS   P        P V
Sbjct: 302 VSMTPSLSTNNTATSVPAPYSSAASVNVVPGHATTI-LHHEESSALPPTAAWAKLSPSV 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,800
Number of Sequences: 5004
Number of extensions: 56327
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)