Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_L12
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    30   0.39 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    29   1.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    27   4.8  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   6.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.3  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    26   8.4  

>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -1

Query: 552 RWPRSTPQGSSDRSASSI-APARLVXVEVADECDSDGPRVVPVGVRADVQPAGALVHLAV 376
           R P  +P  +S  S++S   P  L+  +  D  D DGP+V+PV  RA   PA      ++
Sbjct: 13  RRPYLSPLQTSFPSSTSFQTPTFLIEEDDEDTEDDDGPQVLPVH-RAP-SPAAFRKRGSI 70

Query: 375 TSHQETRVRCPSI 337
           TS  +  V  P++
Sbjct: 71  TSMDQYLVNMPAV 83


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 395 PSYTLPLPPTRKRGSDVPVLARPP 324
           PSY+LP P  +K+ + +P+ A  P
Sbjct: 29  PSYSLPAPVAQKKNAQIPLKASKP 52


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -2

Query: 431  P*VCAPTCSQPEPSYTLPLPPTRKRGSDVPVLARPPCGWSGYSAP--APRSQRPS 273
            P V AP+ + P P  ++  PP     S +P + +P  G      P  AP   +PS
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS 1204


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 377 LPPTRKRGSDVPVLARPP 324
           LPP  K GSD P L+ PP
Sbjct: 302 LPPGLKNGSDYPYLSVPP 319


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = -2

Query: 425 VCAPTCSQPEPSYTLPLPPTRKRGSDVPVLARPPCGWSGYSAPAPRSQRPS 273
           V  P   +P P    PLPP  +R      L R P  +   S   P SQ P+
Sbjct: 34  VSTPAFMEPAPVSKKPLPPPTRR------LPRKPLPFRSTSLQPPSSQPPA 78


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = -2

Query: 416 PTCSQPEPSYTLPLPPTRKRGSDVPVLARPPCGWSGYSAPAPRSQRPSCRR 264
           P       + +LP PP   R +    +  PP G S    P PRS  PS  R
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS-APSTGR 374


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 380 PLPPTRKRGSDVPVLARPPCGWSGYSAPAPRSQRPSCRRV 261
           PLPP+  + + VP     P        P  R  + S RRV
Sbjct: 324 PLPPSASKSNSVPQKISNPKVEQNLGFPISREDKKSTRRV 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,704
Number of Sequences: 5004
Number of extensions: 56923
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)