Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_L11
(873 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 34 0.15
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 34 0.15
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.20
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.20
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.20
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 33 0.20
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 32 0.62
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 0.81
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.9
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 3.3
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 3.3
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 4.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 4.3
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.7
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 5.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.7
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +3
Query: 732 LPFXXPPQXLXPLXXPXX-PXGXPXSPPXLXPPXPF*XPPXXPPXP 866
LP PP L P P P PP + PP P PP PP P
Sbjct: 323 LPPPPPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPP 368
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +3
Query: 747 PPQXLXPLXXPXXPXGXPXSPPXLXPPXPF*XPPXXPPXP 866
PP P P P P PP PP P PP PP P
Sbjct: 34 PPPMCAPPPLPCPPP--PICPPQFCPPPPMCPPPPPPPPP 71
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +3
Query: 735 PFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF*XPPXXPPXP 866
P PP + P P P PP PP P PP PP P
Sbjct: 42 PLPCPPPPICP---PQFCPPPPMCPPPPPPPPPPMCPPPPPPMP 82
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +3
Query: 735 PFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF*XPPXXPPXP 866
P PP P P P PP PP P PP PP P
Sbjct: 36 PMCAPPPLPCP-PPPICPPQFCPPPPMCPPPPPPPPPPMCPPPP 78
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 747 PPQXLXPLXXPXXPXGXPXSPPXLXPPXPF*XPPXXPPXP 866
PP P P P PP + PP PP PP P
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPP 66
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/63 (31%), Positives = 21/63 (33%)
Frame = +3
Query: 669 PPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF*XPP 848
PP PP P P PPQ P P P P PP + PP P P
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPIC-PPQFCPP--PPMCPPPPPPPPPPMCPPPPPPMPS 83
Query: 849 XXP 857
P
Sbjct: 84 YSP 86
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.5 bits (73), Expect = 0.20
Identities = 23/67 (34%), Positives = 23/67 (34%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF*XP 845
PPP PP P P PP P P P G P PP PP F
Sbjct: 729 PPPPGGLPPITGGPPPPPP----PGGLPPISGGPPPPPPPPGGCPPPPPP-PPPGGFKGG 783
Query: 846 PXXPPXP 866
P PP P
Sbjct: 784 PPPPPPP 790
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/73 (31%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Frame = +3
Query: 654 LISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXP--XSPPXLXPP 827
+ PPP PP P P PP P P P G P P PP
Sbjct: 709 ITGGPPPPPGLPPITGGPPPPPP----PGGLPPITGGP-PPPPPPGGLPPISGGPPPPPP 763
Query: 828 XPF*XPPXXPPXP 866
P PP PP P
Sbjct: 764 PPGGCPPPPPPPP 776
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.5 bits (73), Expect = 0.20
Identities = 23/67 (34%), Positives = 23/67 (34%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF*XP 845
PPP PP P P PP P P P G P PP PP F
Sbjct: 729 PPPPGGLPPITGGPPPPPP----PGGLPPISGGPPPPPPPPGGCPPPPPP-PPPGGFKGG 783
Query: 846 PXXPPXP 866
P PP P
Sbjct: 784 PPPPPPP 790
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/73 (31%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Frame = +3
Query: 654 LISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXP--XSPPXLXPP 827
+ PPP PP P P PP P P P G P P PP
Sbjct: 709 ITGGPPPPPGLPPITGGPPPPPP----PGGLPPITGGP-PPPPPPGGLPPISGGPPPPPP 763
Query: 828 XPF*XPPXXPPXP 866
P PP PP P
Sbjct: 764 PPGGCPPPPPPPP 776
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.5 bits (73), Expect = 0.20
Identities = 23/67 (34%), Positives = 23/67 (34%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF*XP 845
PPP PP P P PP P P P G P PP PP F
Sbjct: 312 PPPPGGLPPITGGPPPPPP----PGGLPPISGGPPPPPPPPGGCPPPPPP-PPPGGFKGG 366
Query: 846 PXXPPXP 866
P PP P
Sbjct: 367 PPPPPPP 373
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/73 (31%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Frame = +3
Query: 654 LISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXP--XSPPXLXPP 827
+ PPP PP P P PP P P P G P P PP
Sbjct: 292 ITGGPPPPPGLPPITGGPPPPPP----PGGLPPITGGP-PPPPPPGGLPPISGGPPPPPP 346
Query: 828 XPF*XPPXXPPXP 866
P PP PP P
Sbjct: 347 PPGGCPPPPPPPP 359
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Frame = +3
Query: 654 LISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXLXP--P 827
+I+ PPP PP P PP P P P PP P P
Sbjct: 37 VIAGPPPCFDCPPPAPIFVAPPPPPCFGPACPPPCFGPACVPLAPIIVNGPPPCFGPACP 96
Query: 828 XPF*XPPXXPPXP 866
P P PP P
Sbjct: 97 PPCFGPACAPPAP 109
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 31.9 bits (69), Expect = 0.62
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = -3
Query: 865 GXGGXXGGX*KGXGGXXXGGLXGXPXGXXGXKRGXRXWGGXXXG 734
G GG GG G GG GG+ G P G G GG G
Sbjct: 120 GGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFG 163
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = -3
Query: 865 GXGGXXGGX*KGXGGXXXGGLXGXPXGXXGXKRGXRXWGGXXXG 734
G GG GG G GG GG G G G G +GG G
Sbjct: 171 GGGGYGGG---GDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMG 211
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.5 bits (68), Expect = 0.81
Identities = 23/67 (34%), Positives = 24/67 (35%)
Frame = +3
Query: 660 SNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF* 839
S PP P S P LF P PP P P G +PP PP PF
Sbjct: 148 SGGPP-GPFDPSGAPPSGGPPGLFDPSGAPPSG-----GPPGPFGPSGAPPSGGPPGPF- 200
Query: 840 XPPXXPP 860
P PP
Sbjct: 201 NPSEAPP 207
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 451 PPGPFNPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 509
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 510 GPPGPF-DPSGAPP 522
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 211 PTGPFDPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 269
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 270 GPPGPF-DPSGAPP 282
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 271 PPGPFDPSGAPP-SGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSG 329
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 330 GPPGPF-DPSGAPP 342
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/74 (31%), Positives = 25/74 (33%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S +P P P P P P +PP
Sbjct: 286 PPGPFDPSGAPP-SGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG 344
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 345 GPPGPF-NPSGAPP 357
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 346 PPGPFNPSGAPP-SGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSG 404
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 405 GPPGPF-NPSGAPP 417
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 361 PPGPFDPSGAPP-SGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 419
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 420 GPPGPF-NPSGAPP 432
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 406 PPGPFNPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 464
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 465 GPPGPF-NPSGAPP 477
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 421 PPGPFNPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 479
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 480 GPPGPF-DPSGAPP 492
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 226 PPGPFNPSGAPP-SGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG 284
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 285 GPPGPF-DPSGAPP 297
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 316 PPGPFNPSGAPP-SGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG 374
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 375 GPPGPF-DPSGAPP 387
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 331 PPGPFDPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSG 389
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 390 GPPGPF-DPSGAPP 402
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 376 PPGPFDPSGAPP-SGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 434
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 435 GPPGPF-NPSGAPP 447
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 391 PPGPFDPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 449
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 450 GPPGPF-NPSGAPP 462
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 436 PPGPFNPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG 494
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 495 GPPGPF-NPSGAPP 507
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 166 PPGLFDPSGAPP-SGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSG 224
Query: 819 XPPXPF*XPPXXPP 860
PP PF P PP
Sbjct: 225 GPPGPF-NPSGAPP 237
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/80 (30%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Frame = +3
Query: 639 PXXXFLISNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL 818
P F S PP PP S P P P P P P +PP
Sbjct: 241 PPGPFDPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSG 299
Query: 819 XPPXPF----*XPPXXPPXP 866
PP PF P PP P
Sbjct: 300 GPPGPFDPSGAQPSGGPPGP 319
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.5 bits (68), Expect = 0.81
Identities = 21/69 (30%), Positives = 25/69 (36%)
Frame = +3
Query: 660 SNPPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF* 839
++PPP PP+ P PP P P P P P + PP P
Sbjct: 120 ASPPP--PPPPRKSRAGGSSPP------PPPPPRVPRTPP--PRSPPPRRPPMTPPSPQR 169
Query: 840 XPPXXPPXP 866
PP PP P
Sbjct: 170 RPPRTPPSP 178
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/67 (26%), Positives = 20/67 (29%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF*XP 845
PPP P +P PP+ P P P PP P P
Sbjct: 124 PPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNP 183
Query: 846 PXXPPXP 866
P PP P
Sbjct: 184 PRTPPSP 190
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/69 (33%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Frame = +3
Query: 669 PPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXL---XPPXPF* 839
PP PP S KP F+P P + P P P G P PP PP P
Sbjct: 47 PPSGILPP---GQSIPKPSFFIPPPVPNGFIPP---PPGPGGIPPPPPMFAGGIPPPPPM 100
Query: 840 XPPXXPPXP 866
PP P
Sbjct: 101 MGGIPPPPP 109
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPP-XLXPPXPF*X 842
PPP PP S P PP+ P P P G P PP PP P
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPA-AGSPPPPRTGSP---PPPPTGSPPPPPAGGSPPPPRAG 295
Query: 843 PPXXPPXP 866
P PP P
Sbjct: 296 SPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPP-XLXPPXPF*X 842
PPP PP S P PP+ P P P G P PP PP P
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPA-AGSPPPPRTGSP---PPPPTGSPPPPPAGGSPPPPRAG 316
Query: 843 PPXXPPXP 866
P PP P
Sbjct: 317 SPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPP-XLXPPXPF*X 842
PPP PP S P PP+ P P P G P PP PP P
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPA-AGSPPPPRTGSP---PPPPTGSPPPPPAGGSPPPPRAG 301
Query: 843 PPXXPPXP 866
P PP P
Sbjct: 302 SPPPPPPP 309
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF--- 836
PPP PP + P F+ PP + P P G P + PP P
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPP--PPHFGMGPPRG--FMPPPHPMMFR 345
Query: 837 --*XPPXXPPXP 866
PP PP P
Sbjct: 346 GGPYPPFFPPPP 357
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/70 (30%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPXLFLP-----FXXPPQXLXPLXXPXXPXGXPXSPPXLXPPX 830
PP PP P F+P PP+ P P G P PP PP
Sbjct: 299 PPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPY-PPFFPPPP 357
Query: 831 PF*XPPXXPP 860
P P PP
Sbjct: 358 PHFMRPSSPP 367
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF--- 836
PPP PP + P F+ PP + P P G P + PP P
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPP--PPHFGMGPPRG--FMPPPHPMMFR 345
Query: 837 --*XPPXXPPXP 866
PP PP P
Sbjct: 346 GGPYPPFFPPPP 357
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/70 (30%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPXLFLP-----FXXPPQXLXPLXXPXXPXGXPXSPPXLXPPX 830
PP PP P F+P PP+ P P G P PP PP
Sbjct: 299 PPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPY-PPFFPPPP 357
Query: 831 PF*XPPXXPP 860
P P PP
Sbjct: 358 PHFMRPSSPP 367
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 765 PLXXPXXPXGXPXSPPXLXPPXPF*XPPXXPPXP 866
P+ P P P P PP P PP PP P
Sbjct: 48 PMPMPVCPP-PPPCPAQFCPPPPICPPPPPPPMP 80
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPX-LFLPFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF*X 842
PPP+ PP +P PP P P G P PP PP
Sbjct: 535 PPPVSSIPPPPPIAGLLAANGTNVPIPPPP----PPPLPQNLSGAPPPPPP--PPPMLGG 588
Query: 843 PPXXPPXP 866
PP PP P
Sbjct: 589 PPPPPPPP 596
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +3
Query: 735 PFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF*XPPXXPPXP 866
P PP P P P P PP P P PP PP P
Sbjct: 88 PLPPPPPPASPCCGPS-PVPAPCCPPPPAPAAPC-CPPPPPPTP 129
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 735 PFXXPPQXLXPLXXPXXP-XGXPXSPPXLXPPXPF*XPPXXPPXP 866
P PP + P+ P P G PP PP PP PP P
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPP--PPPSSGMWPPPPPPPP 304
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPXLF-LPFXXPPQXLXPLXXPXXPXGX-PXSPPXLXPPXPF* 839
PP + PP P + +P PP P P P P + P + PP P
Sbjct: 310 PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPS 369
Query: 840 XPPXXP 857
PP P
Sbjct: 370 RPPAPP 375
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = +3
Query: 687 PPKXKXXSXXKPXLFLPFXXPPQXLXPLXXPXXPXGXPXSPPXLXPPXPF*XPPXXPPXP 866
PP P P PQ P P P PP PP P PP PP P
Sbjct: 97 PPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPP-PPPAP 155
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 735 PFXXPPQXLXPLXXPXXP-XGXPXSPPXLXPPXPF*XPPXXPPXP 866
P PP + P+ P P G PP PP PP PP P
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPP--PPPSSGMWPPPPPPPP 314
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Frame = +3
Query: 666 PPPLXXXPPKXKXXSXXKPXLF-LPFXXPPQXLXPLXXPXXPXGX-PXSPPXLXPPXPF* 839
PP + PP P + +P PP P P P P + P + PP P
Sbjct: 320 PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPS 379
Query: 840 XPPXXP 857
PP P
Sbjct: 380 RPPAPP 385
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,448,798
Number of Sequences: 27780
Number of extensions: 95148
Number of successful extensions: 527
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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