Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_L09
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 38 0.008
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 31 0.96
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145... 31 1.7
05_03_0032 - 7582595-7582690,7582879-7583004,7583119-7583185,758... 30 2.9
11_01_0385 + 2915532-2916482 29 3.9
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 29 5.1
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 28 9.0
09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006 28 9.0
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 28 9.0
04_03_0934 - 20912932-20912997,20913131-20913172,20913477-209138... 28 9.0
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 38.3 bits (85), Expect = 0.008
Identities = 22/71 (30%), Positives = 27/71 (38%)
Frame = -1
Query: 911 PXGXWGNPGWXXXGGRGKPXSPXPEXPGXQGSQXGXGNXKXXPKNPNXXXPXGGGGSXLK 732
P G G P GG G P +P P G+ + P P G GG
Sbjct: 1142 PEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTP 1201
Query: 731 XGXPSPHLPPG 699
G P+P +PPG
Sbjct: 1202 PGAPAPPMPPG 1212
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 31.5 bits (68), Expect = 0.96
Identities = 27/95 (28%), Positives = 31/95 (32%), Gaps = 3/95 (3%)
Frame = +1
Query: 631 PLSPXQ*TSLPXTPWXPFLCSQVPGGRCGXGXPXFNXLPPPPXGXXXF---GFLGXXFXF 801
PL P Q + LP P P + G P F PPPP F G
Sbjct: 348 PLPPPQPSHLPPLPPRPPTMPSMQPDMLAPGVPRFPPPPPPPDTRPPFMAPGVNARPLPP 407
Query: 802 PXPX*LPCXPGXSGXGEXGXPLPPXXXHPGFPQXP 906
P P P + G P PP P +P P
Sbjct: 408 PPPGLPPAQMQMAPFGVPPGP-PPMLPPPFYPGPP 441
>07_01_1143 -
10711023-10711884,10713603-10713826,10714253-10714522,
10715071-10715175
Length = 486
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 629 PHYHPGNKXVYXPPHGXHFYVPRFP 703
P+YH G Y PP+G + PR P
Sbjct: 413 PYYHGGQYPPYYPPYGGYMPPPRMP 437
>05_03_0032 -
7582595-7582690,7582879-7583004,7583119-7583185,
7583268-7583470
Length = 163
Score = 29.9 bits (64), Expect = 2.9
Identities = 24/81 (29%), Positives = 28/81 (34%)
Frame = -1
Query: 872 GGRGKPXSPXPEXPGXQGSQXGXGNXKXXPKNPNXXXPXGGGGSXLKXGXPSPHLPPGTW 693
GG G P E P G + G P+ P G G + S P GT
Sbjct: 4 GGGGNPLGAGDENPRGGGGENTMGTSGGNPRGYGGRGPRGCSGESPRGYSNSK--PTGTV 61
Query: 692 EHKNGXHGVXGKLVYCXGDNG 630
E GK V C GD+G
Sbjct: 62 E--GWVAARLGKWVACGGDDG 80
>11_01_0385 + 2915532-2916482
Length = 316
Score = 29.5 bits (63), Expect = 3.9
Identities = 24/76 (31%), Positives = 24/76 (31%)
Frame = +1
Query: 661 PXTPWXPFLCSQVPGGRCGXGXPXFNXLPPPPXGXXXFGFLGXXFXFPXPX*LPCXPGXS 840
P TP P PGG P F PPP G P P P P
Sbjct: 209 PPTPAWPH-----PGGNKWPPLPPFPSHPPPTPAWPQPGNKWPPLP-PFPSHPPPTPAWP 262
Query: 841 GXGEXGXPLPPXXXHP 888
G PLPP HP
Sbjct: 263 HPGNQWPPLPPFPFHP 278
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -2
Query: 298 LKRLSLPRQPP*MNSSHFFVF*LYEYSLKWALXRARIAKSLLAYRLRCWLI 146
++R++ PRQ + H F YE +K L R + +R WL+
Sbjct: 228 IRRVAQPRQEEQPSDDHLFFLEAYEDLMKAFLERNKFGNFPYGFRANTWLV 278
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +1
Query: 622 ICTPLSPXQ*TSLPXTPWXPFLCSQVPGGRCGXGXPXFNXLPPP 753
+ TP T+ P P P +C+ +PG P PPP
Sbjct: 434 LTTPSPSVPNTAAPPAPLSPLICTTLPGSPLPQISPLRGPSPPP 477
>09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006
Length = 585
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/57 (26%), Positives = 20/57 (35%)
Frame = -1
Query: 872 GGRGKPXSPXPEXPGXQGSQXGXGNXKXXPKNPNXXXPXGGGGSXLKXGXPSPHLPP 702
GG G +P P S + PK+ P GGG + P+ H P
Sbjct: 227 GGGGSSGAPGPSHGPRDDSASDLKGKRKMPKSRPPSPPRGGGAERVADRPPAGHKRP 283
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 629 PHYHPGNKXVYXPPHGXHFYVPRFPXXXXXXXSPXLMXSPHPP 757
PH+HP + + PPH + P P P PHPP
Sbjct: 34 PHHHPPHHHPH-PPHHHPPHHPHPPHHPHPPHHPHPPHHPHPP 75
>04_03_0934 -
20912932-20912997,20913131-20913172,20913477-20913845,
20913949-20914080
Length = 202
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Frame = -1
Query: 863 GKPXSPXPEXPGXQGSQXGXG-NXKXXP---KNPNXXXPXGGGGSXLKXGXPSP 714
G P +P P P GS G G + P ++P P G G+ G PSP
Sbjct: 73 GAP-APAPAIPPLPGSDDGGGGDMPTLPSERRSPRGALPGGNAGAEANAGAPSP 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,308,530
Number of Sequences: 37544
Number of extensions: 392921
Number of successful extensions: 831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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