Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_L08
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    28   1.4  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    27   4.4  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    26   5.8  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   7.7  

>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 122 HGNQEVEVLKDNVHNASQLVVDYQTNT-LFFSHSSLFEGKTVLKSAYLNLNTKEFGEISG 298
           H    ++V++  V + ++ V  Y  N  L F   S   GKT L S+++N NT      + 
Sbjct: 396 HNTDALKVMRKRV-SQNRKVSKYDRNVFLCFVVGSKSCGKTALLSSFINNNTNRLTPNTV 454

Query: 299 INSGVATAYDRSKNVVYLGWTGWDI 373
           +NS    +  R   +  +G T  DI
Sbjct: 455 VNSVEFQSTQRYLVLSEIGETDLDI 479


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +2

Query: 83  MKLIILITIIAFVHGNQEVEVLKDNVHNASQLVVDYQTNTLFFSHSSLF 229
           ++L+  ++IIA +HGN+E+ V   ++   + L +D + +      SS F
Sbjct: 408 IQLLTPVSIIASLHGNKEIGV--QDIEECNDLFLDARRSAQVVKSSSGF 454


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 761 NIPPFSLMKKIAFGVEKYNLSSKSLANPLTGITC 660
           N+P  S  KK++ GV+  NL++ S+ + +  I C
Sbjct: 82  NLPKASKKKKVSLGVQDKNLAT-SIKSEIDAIEC 114


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 632 IFVSTKMPAELAKYILYFLLSAIKLVLMSVSSGTI 528
           +F+   M   ++    YFLLS + L + S+S G I
Sbjct: 159 LFLLLSMSDSMSSISYYFLLSLVLLYIASISLGRI 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,519,721
Number of Sequences: 5004
Number of extensions: 76740
Number of successful extensions: 232
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)