Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_L06
         (1012 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.15 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.15
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
 Frame = +3

Query: 759 PXXXPPXXPPAAXGXPPPPXX--PPPPXAXPPPXGPXXPXP 875
           P    P   P+    P  P    PP P   PPP GP    P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 27.1 bits (57), Expect = 0.27
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +1

Query: 430 GGXGPXRXPXRPP-LPPXXAPPXXXXGPPP 516
           G  GP   P + P  P   +PP    GPPP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 26.2 bits (55), Expect = 0.47
 Identities = 14/45 (31%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
 Frame = +3

Query: 732 PSXXPPXXXPXXXPPXXPPAAXGXPPPPXXPPP--PXAXPPPXGP 860
           PS   P   P        P     P P   PPP  P   PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.8 bits (54), Expect = 0.62
 Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
 Frame = +3

Query: 648 AGPPXPPPXX-PXXXXPPAXXPPXAXRXPPSXXPPXXXPXXXP 773
           +G P P P        P    PP   + PP   PP   P   P
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 0.82
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 394 GPPGPXPGXGXXGGXGPXRXPXRPPLPPXXAPPXXXXGPPP 516
           G PGP P         P R    PP P    PP    G PP
Sbjct: 19  GAPGPQPSP-HQSPQAPQRGS--PPNPSQGPPPGGPPGAPP 56



 Score = 25.4 bits (53), Expect = 0.82
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 431 PXXPXPGXGPGGPXGXXPGXPP 366
           P  P  G  PGGP G  P   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 1.1
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
 Frame = +1

Query: 322 PGPVPXXFPRXXAXXGGXP-----GXXPXGPPGPXP 414
           PGP P       A   G P     G  P GPPG  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 1.9
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -3

Query: 440 PXPPXXPXPGXGPGGPXGXXP 378
           P P   P PG  PG P    P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
 Frame = -3

Query: 476 GGRGGRXGXRXGPXPPXX---PXPGXGPGGPXGXXPGXPP 366
           G  G +      P  P     P P  GP  P G  PG PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGP--PPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 4.4
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +3

Query: 804 PPPPXXPPPPXAXPPPXGPXXPXPXXPXARXP 899
           P P   P  P    PP     P P  P    P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.8
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 433 PXXAPPXGXGPGVPXGXXPA 374
           P   PP G  PG P    P+
Sbjct: 42  PSQGPPPGGPPGAPPSQNPS 61


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 804 PPPPXXPPPPXAXPPP 851
           PP P  PPPP +   P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 464 PPSPXXPPPPXXXXG 508
           PP P  PPPP    G
Sbjct: 338 PPKPAPPPPPPSSSG 352


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -1

Query: 859 GPXGGGXAXGGGGXXGGGGXPXAAG 785
           G  GG    G     GGGG   A+G
Sbjct: 33  GASGGSIVVGANNGGGGGGLGIASG 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.149    0.523 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,859
Number of Sequences: 438
Number of extensions: 9264
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33621042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)