Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_L04
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   167   1e-42
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   167   1e-42
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    47   4e-06
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   1.8  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   5.5  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.2  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   7.2  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   7.2  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   9.5  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    25   9.5  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   9.5  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  167 bits (407), Expect = 1e-42
 Identities = 75/89 (84%), Positives = 85/89 (95%)
 Frame = +2

Query: 215 RLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVN 394
           RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN
Sbjct: 47  RLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVN 106

Query: 395 NKGEMKGSAITGPVAKECADLWPRIASNA 481
            KGEMKGSAITGPVAKECADLWPRIASNA
Sbjct: 107 PKGEMKGSAITGPVAKECADLWPRIASNA 135



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 22/35 (62%), Positives = 32/35 (91%)
 Frame = +1

Query: 100 AGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQG 204
           +G K+R++LGLPV A++NCADN+GAKNLY+++V G
Sbjct: 9   SGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFG 43


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  167 bits (407), Expect = 1e-42
 Identities = 75/89 (84%), Positives = 85/89 (95%)
 Frame = +2

Query: 215 RLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVN 394
           RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN
Sbjct: 47  RLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVN 106

Query: 395 NKGEMKGSAITGPVAKECADLWPRIASNA 481
            KGEMKGSAITGPVAKECADLWPRIASNA
Sbjct: 107 PKGEMKGSAITGPVAKECADLWPRIASNA 135



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 22/35 (62%), Positives = 32/35 (91%)
 Frame = +1

Query: 100 AGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQG 204
           +G K+R++LGLPV A++NCADN+GAKNLY+++V G
Sbjct: 9   SGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFG 43


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
 Frame = +2

Query: 236 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 388
           A  GD +V  VKK +            R  +  A+++R + P RR DG ++ F+DNA V+
Sbjct: 31  ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90

Query: 389 VNNKGEMKGSAITGPVAKE 445
           VN + E  G+ I   VA E
Sbjct: 91  VNKECEPLGTRILSVVANE 109


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 131  RPREIRNFAPAGTTTSSLRHFVVSK 57
            RP+E  NF  AG  T+ L++++VSK
Sbjct: 1346 RPKEEINFQEAGVLTAPLKNWLVSK 1370


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 269 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 379
           KKG P  RK   P+++        PF  RD +FI  E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 417 EPFISPLLLTMTPALSSKYINTPS 346
           +P+  P+L +  P L   Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -1

Query: 459  HRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTA 307
            + + H    GP++   ++  L     P  +S Y+N  +  L+GF+ ++  A
Sbjct: 963  YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 465 RGHRSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLLNGF 328
           R H+ AH+       AEP ++P++   + P+++    +TPS L   F
Sbjct: 60  RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 254 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 385
           IV    KGK  L   + P++ I       R  G  +Y ED  GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 70  KCLREDVVVPAGAKFR-ISLGLPVGAVINCADNTGAKNLYVIAVQGYQRSPEQTAGGRFR 246
           K LRE++ +PA A F+ +S   P GA +    +   K +Y ++    + +P   A  R R
Sbjct: 244 KELRENIGIPAAASFKHVS---PAGAAVGLPLSDVEKKVYFVS-DITEFTPLACAYARAR 299

Query: 247 GHD 255
           G D
Sbjct: 300 GAD 302


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = -1

Query: 387 MTPALSSKYINTPSRLLNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 208
           +  ALSS+Y    S L        +T  +T   SS     T +++ +P P    + R P 
Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836

Query: 207 IXLDS 193
             L +
Sbjct: 837 TPLSA 841


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,642
Number of Sequences: 5004
Number of extensions: 43812
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)