Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_L04
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   171   7e-43
AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical ...    29   3.9  
M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  171 bits (415), Expect = 7e-43
 Identities = 79/92 (85%), Positives = 85/92 (92%)
 Frame = +2

Query: 206 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 385
           I+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGV
Sbjct: 45  IRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGV 104

Query: 386 IVNNKGEMKGSAITGPVAKECADLWPRIASNA 481
           IVNNKGEMKGSAITGPVAKECADLWPRIA+NA
Sbjct: 105 IVNNKGEMKGSAITGPVAKECADLWPRIAANA 136



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 30/35 (85%), Positives = 34/35 (97%)
 Frame = +1

Query: 100 AGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQG 204
           +GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V G
Sbjct: 10  SGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYG 44


>AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.9 protein.
          Length = 1142

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 20  HYREFLKILLSKFXIQQNV*ERTWWFPRERNSVS 121
           H+R   KI++SK      V E T++FP+  ++ S
Sbjct: 702 HFRSLSKIIISKIMYSCTVTETTYYFPKMNHACS 735


>M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical
           protein B0303.11 protein.
          Length = 903

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 441 KNVLICGRVLPQTPTSIA*ILRFXI 515
           K++LICG ++PQ+P S + +L+  I
Sbjct: 504 KSLLICGYIIPQSPCSRSYLLQLKI 528


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 391 DYDTRIVLKVYKYSITPSERFPL 323
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,112,154
Number of Sequences: 27780
Number of extensions: 267965
Number of successful extensions: 666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)