Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_L02
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.016
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.79 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   3.2  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   4.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 812 PPPPXXXGXGXXPPPPPP 759
           PPPP   G G  PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 31.1 bits (67), Expect = 0.19
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 812 PPPPXXXGXGXXPPPPPP 759
           PPPP     G  PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 812 PPPPXXXGXGXXPPPPPP 759
           PPPP   G     PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 809 PPPXXXGXGXXPPPPPP 759
           PPP     G  PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 812 PPPPXXXGXGXXPPPPPP 759
           P PP     G  PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 812 PPPPXXXGXGXXPPPPP 762
           PPP    G    PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 812 PPPPXXXGXGXXPPPPPP 759
           PPPP        PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 812 PPPPXXXGXGXXPPPPPP 759
           PPPP        PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 520 PPPPXGXXPXXGGXXXPPPXXKXXXVXKKKKK 615
           PPPP G  P       PPP      V K+K K
Sbjct: 12  PPPPPGFEP----PSQPPPPPPPGYVKKRKNK 39


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 163 RVPKGPPXPXFXTGVIQIPPRK-PANVHRXEQRPPLLND 50
           +VP+GPP P     V+  PPRK  A   +  Q PP +++
Sbjct: 221 KVPRGPPSP--PPPVLHSPPRKVSAQEQQDWQIPPSISN 257


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.0 bits (47), Expect(2) = 4.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -1

Query: 809 PPPXXXGXGXXPPPPPP 759
           P       G  PPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPP 311



 Score = 21.8 bits (44), Expect(2) = 4.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 776 PPPPPPXXXXF 744
           PPPPPP    F
Sbjct: 308 PPPPPPPSNDF 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,057
Number of Sequences: 5004
Number of extensions: 28515
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)