Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_L01
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 44 2e-04
01_06_0498 + 29810105-29810401,29811448-29812726,29813969-298142... 33 0.39
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 32 0.52
06_01_0227 - 1733119-1734099 32 0.68
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 31 0.90
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 30 2.8
03_06_0644 + 35253858-35254112,35254301-35254390,35254475-352545... 30 2.8
10_08_0357 - 17158414-17160150,17160534-17160710 29 3.6
06_02_0199 - 12940459-12940689,12940787-12940930 29 3.6
03_01_0441 + 3418622-3420988 29 3.6
01_04_0107 + 16086724-16086799,16088007-16088288,16088523-160885... 29 3.6
10_08_0359 - 17167829-17169595,17169976-17169996 29 4.8
06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397 29 4.8
10_08_0354 - 17104223-17106061,17106770-17106794,17107317-171075... 29 6.4
01_01_0648 - 4917123-4917651,4917728-4917857,4917958-4918093 29 6.4
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 195 KFIGDSNQRTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNEG-FKVVSVDASDKM 371
+ +GD RT+ Y+D L+G TVLD CGTGI S+ G +V++VD S KM
Sbjct: 268 EMLGDK-VRTEAYRDALLGNPSLMNGATVLDVGCGTGILSLFAAKAGASRVIAVDGSAKM 326
Query: 372 LKHA 383
+ A
Sbjct: 327 VSVA 330
>01_06_0498 +
29810105-29810401,29811448-29812726,29813969-29814204,
29814327-29814968
Length = 817
Score = 32.7 bits (71), Expect = 0.39
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 285 DAACGTGIDSMMLVNEGFKVVSVDASDKMLKHAL 386
DA CGTG S+ + VV+ DAS+ ++HA+
Sbjct: 593 DAGCGTGQASISIAEHYDSVVATDASEGQIRHAV 626
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 32.3 bits (70), Expect = 0.52
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 219 RTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNEGFK-VVSVDASDKMLKHALKAR 395
RT Y+ ++ K K V+D CGTGI S+ G K V +V+AS+ A +AR
Sbjct: 67 RTDAYRSAIMHHQKFIEGKVVMDVGCGTGILSVFCARAGAKCVYAVEASEM----ATQAR 122
Query: 396 WEKRKNPKYDDXVI 437
E K DD V+
Sbjct: 123 -EIVKANNLDDKVV 135
>06_01_0227 - 1733119-1734099
Length = 326
Score = 31.9 bits (69), Expect = 0.68
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 276 TVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHA 383
TV DA CGTG ++ L ++G V++ D S M+ A
Sbjct: 152 TVCDAGCGTGSLAIPLASQGASVLASDISAAMVSEA 187
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 31.5 bits (68), Expect = 0.90
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 279 VLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHA 383
V+D CG GI S L G V +DA DK +K A
Sbjct: 73 VIDVGCGGGILSEPLARMGATVTGIDAVDKNIKIA 107
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 273 KTVLDAACGTGIDSMMLVNEG-FKVVSVDASDKMLK 377
+ VLD CGTG+ S+ G +V +VDASD L+
Sbjct: 83 EVVLDVGCGTGVLSIFCAFAGAARVYAVDASDIALQ 118
>03_06_0644 +
35253858-35254112,35254301-35254390,35254475-35254596,
35254731-35254830,35254955-35255001,35255178-35255256,
35255722-35255769
Length = 246
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 207 DSNQRTQNYKDFL-IGLLKNNGCKTVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHA 383
D QRT + + G L TVL CG G D + L G VV +D D ++ A
Sbjct: 53 DLGQRTPAVVELVHSGTLPAGDATTVLVPGCGAGYDVVALSGPGRFVVGLDICDTAIQKA 112
>10_08_0357 - 17158414-17160150,17160534-17160710
Length = 637
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 279 VLDAACGTGIDSMMLVNEGFKVVSVDASD 365
V+ + CG G+ + +L ++G+KVV V+ D
Sbjct: 139 VVGSGCGGGVAAAVLASKGYKVVVVEKGD 167
>06_02_0199 - 12940459-12940689,12940787-12940930
Length = 124
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 230 LQRLLDRS-LEEQRLQDCSGRRLWYW 304
L+R D + +E RL+D +GRR W+W
Sbjct: 65 LRRAADEAKVEVARLRDVAGRRFWWW 90
>03_01_0441 + 3418622-3420988
Length = 788
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -2
Query: 415 GFFLFSQRALRACFNILSEASTDTTLNPS---FTSIME 311
GFF+ QR LR+ +LSE+ ++T + TSI+E
Sbjct: 326 GFFIVEQRVLRSADGLLSESQVESTWETAIAKITSILE 363
>01_04_0107 +
16086724-16086799,16088007-16088288,16088523-16088585,
16088684-16089045
Length = 260
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 364 SEASTDTTLNPSFTSIMESIPVPQAASRTVLQPL 263
S A ++ T + S SI+ES+P PQ +QPL
Sbjct: 57 SMAESENTTSTSHVSIVESLPEPQEPKVEKIQPL 90
>10_08_0359 - 17167829-17169595,17169976-17169996
Length = 595
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 279 VLDAACGTGIDSMMLVNEGFKVVSVDASDKMLK 377
++ + CG G+ + +L + G+KVV V+ D K
Sbjct: 91 IVGSGCGGGVAAAVLASAGYKVVVVEKGDYFTK 123
>06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397
Length = 851
Score = 29.1 bits (62), Expect = 4.8
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = -1
Query: 452 PVGFFNYPIIIFGVLSLLPASFESVLQHLVRSINRHHFKPFIHQHHGVYPSTTSGVQNSL 273
P+ F+N+P L SF S L ++ +N + ++P I Q + + T +G+ L
Sbjct: 571 PILFYNFPRRYKAFLYCNSVSFMSSLSLIILLVNPNLYRPAI-QSYALSVCTVAGLFALL 629
Query: 272 AAVVLQETDQ-----EVFVVLRSLITISDELVPCF 183
A T VFV++ ++ I L+ CF
Sbjct: 630 GAYAAGSTQHLKTSIYVFVLVAVVLFIMIILLVCF 664
>10_08_0354 -
17104223-17106061,17106770-17106794,17107317-17107561,
17108432-17108677
Length = 784
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 279 VLDAACGTGIDSMMLVNEGFKVVSVDASD 365
V+ + CG G+ + +L + G+KVV V+ D
Sbjct: 265 VVGSGCGGGVAAAVLASAGYKVVVVEKGD 293
>01_01_0648 - 4917123-4917651,4917728-4917857,4917958-4918093
Length = 264
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 559 WSPYSXDKWANEFPRHMTASNWVS 488
WSP D + RH TA NW+S
Sbjct: 17 WSPEEDDALRDYINRHGTAGNWIS 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,271,486
Number of Sequences: 37544
Number of extensions: 446776
Number of successful extensions: 1076
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -