Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_K24
(876 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 25 1.2
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 25 1.2
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 25 1.2
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 24 1.6
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 2.8
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 2.8
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 8.5
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 8.5
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 8.5
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 24.6 bits (51), Expect = 1.2
Identities = 7/25 (28%), Positives = 20/25 (80%)
Frame = -1
Query: 531 TRHYLTVVN*EGYREYILSMVLESS 457
+++Y+T+++ G+R++I +M+ +S
Sbjct: 10 SKYYVTIIDAPGHRDFIKNMITGTS 34
Score = 22.6 bits (46), Expect = 4.9
Identities = 15/71 (21%), Positives = 33/71 (46%)
Frame = +2
Query: 515 VR*CLVLATRLSNSGTPLAECKYTIQDDGHSDWVSCVXFSPNHANPIIVSWWLGQNCQGL 694
V+ +V ++ ++ P +E ++ S ++ + ++P + +S W G N
Sbjct: 72 VKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN---- 127
Query: 695 AISLTVSSRLP 727
L VSS++P
Sbjct: 128 --MLEVSSKMP 136
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 24.6 bits (51), Expect = 1.2
Identities = 7/25 (28%), Positives = 20/25 (80%)
Frame = -1
Query: 531 TRHYLTVVN*EGYREYILSMVLESS 457
+++Y+T+++ G+R++I +M+ +S
Sbjct: 26 SKYYVTIIDAPGHRDFIKNMITGTS 50
Score = 22.6 bits (46), Expect = 4.9
Identities = 15/71 (21%), Positives = 33/71 (46%)
Frame = +2
Query: 515 VR*CLVLATRLSNSGTPLAECKYTIQDDGHSDWVSCVXFSPNHANPIIVSWWLGQNCQGL 694
V+ +V ++ ++ P +E ++ S ++ + ++P + +S W G N
Sbjct: 88 VKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN---- 143
Query: 695 AISLTVSSRLP 727
L VSS++P
Sbjct: 144 --MLEVSSKMP 152
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.2
Identities = 7/25 (28%), Positives = 20/25 (80%)
Frame = -1
Query: 531 TRHYLTVVN*EGYREYILSMVLESS 457
+++Y+T+++ G+R++I +M+ +S
Sbjct: 83 SKYYVTIIDAPGHRDFIKNMITGTS 107
Score = 22.6 bits (46), Expect = 4.9
Identities = 15/71 (21%), Positives = 33/71 (46%)
Frame = +2
Query: 515 VR*CLVLATRLSNSGTPLAECKYTIQDDGHSDWVSCVXFSPNHANPIIVSWWLGQNCQGL 694
V+ +V ++ ++ P +E ++ S ++ + ++P + +S W G N
Sbjct: 145 VKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN---- 200
Query: 695 AISLTVSSRLP 727
L VSS++P
Sbjct: 201 --MLEVSSKMP 209
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/24 (29%), Positives = 19/24 (79%)
Frame = -1
Query: 528 RHYLTVVN*EGYREYILSMVLESS 457
++Y+T+++ G+R++I +M+ +S
Sbjct: 84 KYYVTIIDAPGHRDFIKNMITGTS 107
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.4 bits (48), Expect = 2.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1
Query: 598 WTQRLGVMCXILTQSCQPHYCILV 669
W+ LG +C + + C P Y I +
Sbjct: 527 WSHVLGWLCGLSSMLCIPGYMIYI 550
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.4 bits (48), Expect = 2.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1
Query: 598 WTQRLGVMCXILTQSCQPHYCILV 669
W+ LG +C + + C P Y I +
Sbjct: 580 WSHVLGWLCGLSSMLCIPGYMIYI 603
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 8.5
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 253 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 369
I+SS +KT+ +K + NNY K+LY + ++I +
Sbjct: 81 IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 8.5
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 253 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 369
I+SS +KT+ +K + NNY K+LY + ++I +
Sbjct: 81 IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 8.5
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 253 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 369
I+SS +KT+ +K + NNY K+LY + ++I +
Sbjct: 81 IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,689
Number of Sequences: 438
Number of extensions: 5886
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -