Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_K16
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.84 
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   5.9  
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    26   5.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   6.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 742 FFPPXXXPPPPPPG 783
           F PP   PPPPPPG
Sbjct: 18  FEPPSQPPPPPPPG 31


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -2

Query: 279 HCGTSHGPTWS---TKSWTSGFSQSGSAI 202
           + GT H P+WS   + +W +G S  G AI
Sbjct: 45  YIGTRHNPSWSHPYSVTWLNGSSYYGLAI 73


>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 182 NVHLSGIFSLENVAR*RNRQLPQ 114
           N+H+SGI +LENV   +  QL Q
Sbjct: 103 NLHMSGIENLENVLLEQKEQLQQ 125


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 6.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 750 PXXXPPPPPP 779
           P   PPPPPP
Sbjct: 234 PLPAPPPPPP 243



 Score = 21.4 bits (43), Expect(2) = 6.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 744 FSPXXXPPPPP 776
           ++P   PPPPP
Sbjct: 187 YNPPPPPPPPP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,072
Number of Sequences: 5004
Number of extensions: 42176
Number of successful extensions: 201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)