Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_K14
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    27   4.6  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   6.1  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   6.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +2

Query: 668 RSFLXXXXPPXPPXAKPVLXFCAPPXXPPPXPXSPXPXPXP 790
           +  L    PP PP         AP   PPP P    P P P
Sbjct: 725 QKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 695 PXPPXAKPVLXFCAPPXXPPPXP 763
           P PP   P +    PP  PPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 695 PXPPXAKPVLXFCAPPXXPPPXPXSPXPXPXP 790
           P PP A P++    PP  PP    +  P P P
Sbjct: 750 PVPPPA-PIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +2

Query: 692  PPXPPXAKPVLXFCAPPXXPPPXPXSPXPXPXP 790
            PP PP + P      PP   PP P  P   P P
Sbjct: 1707 PPPPPMSVP------PPPSAPPMPAGPPSAPPP 1733


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 692 PPXPPXAKPVLXFCAPPXXPPPXPXSPXPXP 784
           P  PP A P L   APP  P   P +P P P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAP-PLP 450



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 692 PPXPPXAKPVLXFCAPPXXPPPXPXSPXPXPXP 790
           P  PP A P L   AP   PP  P +P   P P
Sbjct: 429 PSLPPSAPPSLPMGAPAA-PPLPPSAPIAPPLP 460



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 692 PPXPPXAKPVLXFCAPPXXPPPXPXSPXPXPXP 790
           PP  P A P+      P  PP  P +P P P P
Sbjct: 450 PPSAPIAPPLP--AGMPAAPPLPPAAPAPPPAP 480



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
 Frame = +1

Query: 679 GXXXXPXPPPRKAGFXFLRPPXXSP----XXPXLPXPPXPXXXXPXASP 813
           G    P PPPR A     +PP  S       P  P P  P    P   P
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 165 RVDSYNRKHSDQCKSDRKFHDFYS*NRKLIITS 67
           RV  ++    D    DRKFHD    NRKL +TS
Sbjct: 259 RVKKHDYGGEDWSLLDRKFHDDDFSNRKLDLTS 291


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 252 VNAMIFIHNFHWINAGGDFAIGTVPAVFLRVDSYNRKHSDQCKSDRKFHDFYS 94
           V+ ++ I NFHW  +     I  V  +  ++D Y R +  + +S  + H  Y+
Sbjct: 388 VDVLLAIMNFHWDESNELTPIVAVDNMLQKLDKYERLYPSR-RSILQEHSLYA 439


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 701 PPXAKPVLXFCAPPXXPPPXPXSP 772
           PP   P+   C P   PPP P  P
Sbjct: 139 PPLHNPLPVSCQPVLRPPPVPQVP 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,055
Number of Sequences: 5004
Number of extensions: 36855
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)