Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_K13
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 42 2e-04
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 40 3e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 40 3e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 3e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 40 6e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 38 0.001
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 38 0.002
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.006
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 36 0.007
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 36 0.010
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.017
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 33 0.070
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.070
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.092
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.092
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.16
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 31 0.16
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 31 0.16
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.37
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.65
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.86
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 1.5
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.5
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 1.5
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.6
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 4.6
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 6.0
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 6.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.0
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 26 8.0
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 41.5 bits (93), Expect = 2e-04
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 248 NMGDESHP-KTLYVGNLDPSVTEVFLCTLFG-QIGDVKGCKIIREPGNDPYAFLEF 409
N D++ P T+YVGNL PS +E L LF Q+G + C R GN P F+EF
Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLC--FRTKGNGPMCFVEF 470
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 269 PKTLYVGNLDP-SVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 409
P +++VG LDP + T L LF + G V CKII + +AFL F
Sbjct: 364 PYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRF 411
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 275 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 376
+LYVG LDPSVTE L LF IG V ++ R+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRD 114
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +3
Query: 447 MNKRVVLDKEMKVNWATSPXNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 626
+N ++ + ++ W+ + K T N +F+ +L P I+ L + F+ FG+I +C
Sbjct: 141 LNYTLIKGRPCRIMWSQRDPSLRKMGTGN---VFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 627 RIVRD 641
++ D
Sbjct: 198 KVAVD 202
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 278 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCH 418
+Y+ NLD +TE LFGQ G++ ++++ + P + F+ + H
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANH 311
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 278 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPGN-DPYAFLEF 409
+++ NLDP++ L F G + CK+ + E GN Y F+ F
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHF 215
Score = 29.9 bits (64), Expect = 0.49
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +3
Query: 447 MNKRVVLDKEMKVNWATSPXN-QPKTDT--SNHHHIFVGDLSPEIETNILREAFAPFGEI 617
+N ++ DK++ V S Q K + +N ++++ +L EI + F FGEI
Sbjct: 228 VNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEI 287
Query: 618 SNCRIVRDPQTLKSTGLCF 674
++ +V+D Q K G F
Sbjct: 288 TSLSLVKD-QNDKPRGFGF 305
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +3
Query: 480 KVNWATSPXNQPKT-DTSNHHHIFVGDLSPEIETNILREAFAP-FGEISNCRIVRDPQTL 653
K+NWA+ + K+ ++ + IFVGDLSP + + FA + + +I+ DPQT
Sbjct: 166 KLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTN 225
Query: 654 KSTGLCF 674
S G F
Sbjct: 226 VSRGYGF 232
Score = 33.5 bits (73), Expect = 0.040
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +2
Query: 275 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PG-NDPYAFLEF 409
TL++G L+P VTE F+ ++ +G K+IR G N Y F+EF
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEF 141
Score = 29.1 bits (62), Expect = 0.86
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 275 TLYVGNLDPSVTEVFLCTLF-GQIGDVKGCKIIREPGND---PYAFLEFT 412
+++VG+L P+V E + +LF + K KI+ +P + Y F+ FT
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/44 (20%), Positives = 24/44 (54%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSTGLCF 674
+++G+L P + +++ + G+ +++R+ T + G CF
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCF 138
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 39.5 bits (88), Expect = 6e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSTGLCFXIIXKXSRC 701
+F+G L+ E + LR+ F FGE+ +C ++RD T +S G F + K +C
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGF-LTFKNPKC 216
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/76 (32%), Positives = 38/76 (50%)
Frame = +3
Query: 447 MNKRVVLDKEMKVNWATSPXNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 626
+N + +D+ ++V+ + P Q DT +FVG+L+ E E L F G I
Sbjct: 245 LNGTMFMDRHLRVDSVSHPMPQ---DTKRC--VFVGNLAFEAEEEPLWRYFGDCGSIDYV 299
Query: 627 RIVRDPQTLKSTGLCF 674
RIVRDP+T G +
Sbjct: 300 RIVRDPKTNLGKGFAY 315
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 272 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEF 409
+ ++VGNL E L FG G + +I+R+P + +A+++F
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/58 (27%), Positives = 34/58 (58%)
Frame = +3
Query: 501 PXNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSTGLCF 674
P + P+ + + +FV ++ ++ + L++ F+ FG +++ RI+R+P T S G F
Sbjct: 89 PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGF 146
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 239 R*ANMGDE-SHPK-TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 379
R N GD+ S P T++VGNL + TE L T FG GD++ ++ +P
Sbjct: 353 RAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDP 401
Score = 30.7 bits (66), Expect = 0.28
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQT--LKSTG-LCFXIIXKXSRC 701
+FVG+LS + L AF G+I + R+ DPQ+ LK G + F I +C
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKC 423
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 35.9 bits (79), Expect = 0.007
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +3
Query: 522 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSTGLCF 674
D S+ +I++G+L ++ + + F+ FGE + +VRD +T KS G F
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAF 76
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 257 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDP-YAFLEF 409
D S +Y+GNLD + E + +F + G+ ++R E G +AFL++
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 35.5 bits (78), Expect = 0.010
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSTGLCFXIIXKXS 695
+FV ++SP + + LR F FGE+ + + +P T S GLC K S
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRS 146
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 34.7 bits (76), Expect = 0.017
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 260 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGND-PYAFLEF 409
E T++VGNL PSVTE L F G++ + R E D YAF+EF
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEF 53
Score = 31.9 bits (69), Expect = 0.12
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 638
+ VG+L+P + ++L AF PFGEI + + R
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHR 39
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 32.7 bits (71), Expect = 0.070
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 278 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEF 409
++VGN+ V+E + +F Q+G VK K++ +P Y F EF
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSTGLCF 674
+FVG++ ++ + E F G + ++V DP+T G F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGF 52
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 32.7 bits (71), Expect = 0.070
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 531 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSTGLCF 674
NH +FVG+L ++ L +AF+ + + ++VRD + K+ G F
Sbjct: 28 NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREG-KTRGFGF 74
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.3 bits (70), Expect = 0.092
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSTGLCF 674
+FV L+P + L F+ FG+I +C+++RD +T S F
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAF 289
Score = 30.3 bits (65), Expect = 0.37
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +2
Query: 278 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGND-PYAFLEF 409
L+V L+P + L +F + G + C++IR E G+ YAF+EF
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.3 bits (70), Expect = 0.092
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIV 635
I+VG LS IE++ L F+ FG +SN I+
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.5 bits (68), Expect = 0.16
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 498 SPXNQPKTDTSNHHHIFVGDLSPEI--ETNILREAFAPFGEISNCRIVRDPQTLKSTGLC 671
+P + P D N +FV +L I T L E F+ FG I +C + P T S G
Sbjct: 409 TPTSTPTIDPCN---LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465
Query: 672 F 674
F
Sbjct: 466 F 466
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIV---RDPQTLKSTGLCFXIIXKXSRC 701
I+VG+L +++ L E F PFG S ++ ++ T + F I ++C
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKC 77
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 257 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEF 409
D + T+Y+GNLD VT+ L L Q G V I R+ ++ + F EF
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 278 LYVGNLDPSVTEVFLCTLFGQIGD-VKGCKIIREPG--NDPYAFLEF 409
L+VGNLDP V E L F +G VK ++ R+ + Y F+ +
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 474 PCRGPLACSWRPALWPPPV*HVNSRNAYGSFPGSRIILQPFTS-PI*PN 331
P PL S +P L PPPV V S S P + QP + P+ PN
Sbjct: 140 PLHNPLPVSCQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPN 188
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 272 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 379
+ +YVGNL V L GQ+G+V C+I+ P
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP 101
Score = 29.5 bits (63), Expect = 0.65
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 525 TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTL 653
T ++VG+LS ++ L+E G + NC I+ P L
Sbjct: 62 TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGL 104
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 278 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 379
+YVGNL + ++ L LF IG V +I EP
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP 315
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 29.5 bits (63), Expect = 0.65
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 278 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 370
L+VGNLD T+ L FGQ+G ++ +++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSTGLCFXIIXKXSRC 701
+FVG+L E L+E F G+I R++ T K G F C
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTC 282
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.1 bits (62), Expect = 0.86
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 519 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 635
++T+ ++F+G+L + EAF FG+I + +I+
Sbjct: 293 SNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL 331
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSTGLCF 674
+FV +L E L F FG ++ ++V+DP T +S G F
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGF 322
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +3
Query: 447 MNKRVVLDKEMKVNWATSPXNQPKT-----DTSNHHHIFVGDLSPEIETNILREAFAPFG 611
+ + + E+KV W + + + ++F+G+L I + +RE PFG
Sbjct: 171 LKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFG 230
Query: 612 EISNCRIVRD 641
I +IV +
Sbjct: 231 PIDQIKIVTE 240
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 272 KTLYVGNLDPS--VTEVFLCTLFGQI 343
KT+YVGNL P+ + E+ C G I
Sbjct: 115 KTVYVGNLPPNTPIDEILSCVRTGPI 140
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRI 632
+FVG L+ + L+ F PFG I N +I
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKI 328
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 278 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP--YAFLEF 409
+YVGN+ + E + +F Q G VK +++ +P P Y F E+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +2
Query: 272 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFT 412
+++YVGN+D SVT L + F G V I+ + G+ +A++EF+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 278 LYVGNLDPSVTEVFLCTLFGQIGDVKG 358
L+V NL V L LF ++GDVKG
Sbjct: 197 LFVTNLPRIVPYATLLELFSKLGDVKG 223
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSTGLCF 674
+FV L+ + + L + F G + + +IVRD + +S G+ +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAY 285
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 776 PXVNPPPXGCXXKAPPXXXPPKP 844
P PPP G PP PP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +3
Query: 468 DKEMKVNWATSPXNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRD 641
DK M+ + A + QP D HI+ + + N RE F + + R VRD
Sbjct: 878 DKIMEADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRD 935
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,939
Number of Sequences: 5004
Number of extensions: 62091
Number of successful extensions: 227
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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