Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_K11
         (911 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0124 + 12116278-12116374,12116595-12116881                       31   1.7  
08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406     28   9.0  
06_01_0500 + 3584743-3585516                                           28   9.0  

>06_02_0124 + 12116278-12116374,12116595-12116881
          Length = 127

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 20/56 (35%), Positives = 22/56 (39%)
 Frame = -3

Query: 909 GQXVGGXXGGGLXKPAQGWEXXGXTPGNXEYXTGVGXMXKGXHXFPGRGERAGPGY 742
           G   GG  GGG  +PA G    G   G+  Y  G G    G     G G   G GY
Sbjct: 61  GYGYGGGYGGGYGRPAYGGGYGGGY-GHPGYGGGYGHPGYGDGYGGGYGSGYGGGY 115


>08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406
          Length = 388

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 481 YGYPQNQGITQERTCXQKXXKRPGTVKRPRCWRFSIGSAPPDEP 612
           YGYP +QG TQ ++        P     P  W + + SA P +P
Sbjct: 202 YGYPPHQGYTQAQSYLLLPEAYP-----PPPWTYPLSSAYPPQP 240


>06_01_0500 + 3584743-3585516
          Length = 257

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 541 KRPGTVKRPRCWRFSIGSAPPDEPHKNRRSSXR 639
           K+PG+ K P      I S PPD PH+  R++ R
Sbjct: 5   KKPGSKKMPTPAVMRIRSPPPD-PHRRARAAPR 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,287,362
Number of Sequences: 37544
Number of extensions: 343281
Number of successful extensions: 801
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)