Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_K10
(1239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.035
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.76
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 3.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 3.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.4
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.3 bits (75), Expect = 0.035
Identities = 32/156 (20%), Positives = 37/156 (23%), Gaps = 2/156 (1%)
Frame = +2
Query: 329 PAXPPXXPPXTXPPAPXXAPXNQPXXPXXXAXPXXXXRXXXRRXTEXAPRXXXXXRGXRX 508
P+ PP P + AP P P P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119
Query: 509 XPXTXXGAXXXXXXPXXPXXPXXXXXPTAPPPXPRRXXAXGAXXXGEXPRXXPGXNXXXA 688
P + P P A PP P A P +
Sbjct: 1120 APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP 1179
Query: 689 XPPRPGXPXPXAPPXXXAPXXP-PXXD-PPTXPPXT 790
P+P P PP AP P P PP PP T
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPST 1215
Score = 32.3 bits (70), Expect = 0.14
Identities = 27/110 (24%), Positives = 27/110 (24%), Gaps = 1/110 (0%)
Frame = +1
Query: 283 PGGXAAAXARXPXXXARXXPXXPPXXPPPXPXXG-PXQPAXXXEXXXXPXGXXTXPXPAX 459
P A P A P P P P P PA P PA
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Query: 460 XRGSPPPXXXXAXXXXTPPHXRXRXXXXXXPXTPXXPPXXTXPNRTPPXA 609
G PP A PP P PP T P P A
Sbjct: 1175 SSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSA 1224
Score = 30.7 bits (66), Expect = 0.44
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Frame = +2
Query: 587 PTAPPPXPRRXXAXG---AXXXGEXPRXXPGXNXXXAXPPRPGXPXPXAPPXXXAPXXPP 757
P+ PP P+ A A G P P PP P P P P PP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK-PSVGVPPVPPP 1213
Query: 758 XXDPPTXPP 784
PP P
Sbjct: 1214 STAPPVPTP 1222
Score = 27.9 bits (59), Expect = 3.1
Identities = 31/147 (21%), Positives = 35/147 (23%)
Frame = +1
Query: 340 PXXPPXXPPPXPXXGPXQPAXXXEXXXXPXGXXTXPXPAXXRGSPPPXXXXAXXXXTPPH 519
P PP PPP P P P+ P A PP
Sbjct: 963 PAAPPSIPPPLPVSNILSSPTSEPPKDHP--------PSAPLSKPVSTSPAAPLARVPPV 1014
Query: 520 XRXRXXXXXXPXTPXXPPXXTXPNRTPPXAPXTXXXGXPKXRXXAAXXXRXKXXXGXPPP 699
+ P P P+ PP T PK A P
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIP 1074
Query: 700 TRXAXPXRPPXAXRPXXTPPXRPPHXA 780
+ A PP P PP P A
Sbjct: 1075 SIPAPSGAPP-VPAPSGIPPVPKPSVA 1100
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.76
Identities = 37/153 (24%), Positives = 42/153 (27%), Gaps = 12/153 (7%)
Frame = +1
Query: 361 PPPXPXXGPXQPAXXXEXXXXPXGXXTXPXP----AXXRGSPPPXXXXAXXXXTPPHXRX 528
PPP P P + P G P P A G PP + PP
Sbjct: 337 PPPPP---PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Query: 529 RXXXXXXPXTPXX--------PPXXTXPNRTPPXAPXTXXXGXPKXRXXAAXXXRXKXXX 684
P P PP T P+ PP AP + P A
Sbjct: 394 AIPGRSAPALPPLGNASRTSTPPVPTPPS-LPPSAPPSLPPSAPPSLPMGAPAA------ 446
Query: 685 GXPPPTRXAXPXRPPXAXRPXXTPPXRPPHXAP 783
PP + P PP PP P AP
Sbjct: 447 ---PPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +2
Query: 329 PAXPPXXPPXTXPPAPXXAPXNQPXXPXXXAXP 427
P+ PP PP P P AP P P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 329 PAXPPXXPPXTXPPAPXXAPXNQPXXP 409
P+ PP PP P AP P P P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAP 447
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 783 GGXVGGSXWGGXXGAXXXGGAXGXGXPGRGG 691
GG GG+ GG GA G G GRGG
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +2
Query: 653 PRXXPGXNXXXAXPPRPGXPXPXAPPXXXAPXXPPXXDP-PTXPP 784
P P A PP+ P P PP P PP P P PP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPP--PPSAPPMPAGPP 1728
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 692 PPRPGXPXPXAPPXXXAPXXPPXXDPPTXP 781
PP P P APP P PP PP P
Sbjct: 1710 PPMSVPPPPSAPPM---PAGPPSAPPPPLP 1736
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +2
Query: 692 PPRP--GXPXPXAPPXXXAPXXPPXXDPPTXPP 784
PP P G P P PP A PP PP PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPP--PPPPPPP 783
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 63 PXXGGPPPPPXXPXXXG 13
P GGPPPPP P G
Sbjct: 756 PIMGGPPPPPPPPGVAG 772
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Frame = +2
Query: 692 PPRPGXPXP---XAPP-XXXAPXXPPXXDPPTXPPXTQKA 799
PPRP P P APP AP P PP P K+
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Score = 26.2 bits (55), Expect = 9.4
Identities = 27/98 (27%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Frame = +1
Query: 289 GXAAAXARXPXXXARXXPXX---PPXXPPPXPXXGPXQPAXXXEXXXXPXGXXTXPXPAX 459
G ++A A P A P PP PP P P PA P P P+
Sbjct: 116 GKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPA-----SAPPIPSKAPPIPS- 169
Query: 460 XRGSPPPXXXXAXXXXTPPHXRXRXXXXXXPXTPXXPP 573
S PP A +PP P P PP
Sbjct: 170 ---SLPPPAQPAAPVKSPP-SAPSLPSAVPPMPPKVPP 203
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 3.1
Identities = 22/77 (28%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Frame = +1
Query: 550 PXTPXXPPXXTXPNRTPPXAPXTXXXGXPKXRXXAAXXXRXKXXXGXPP---PTRXAXPX 720
P TP PP T TPP T G + PP T P
Sbjct: 300 PVTPTVPPTSTSSTSTPPPPASTSSTG-TSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPT 358
Query: 721 RPPXAXRPXXTPPXRPP 771
PP + TPP PP
Sbjct: 359 VPPTSTSSTSTPP--PP 373
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 93 PSXRGPXGXLPXXGGPPPPPXXP 25
PS P LP PPPPP P
Sbjct: 174 PSAAAPATSLPSDYNPPPPPPPP 196
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 701 PGXPXPXAPPXXXAPXXPPXXDPPTXPP 784
PG P P PP P P PP PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQP---PPPPPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.134 0.448
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,252
Number of Sequences: 5004
Number of extensions: 21755
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
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