Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_K09
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061 71 1e-12
03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413 58 7e-09
02_05_0964 - 33133516-33133689,33133780-33133857,33133997-331341... 47 2e-05
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 42 5e-04
06_01_0676 + 4945361-4945531,4945632-4945811,4947145-4947300,494... 41 0.001
10_08_0968 + 21933627-21933785,21933893-21933943,21934094-219341... 33 0.23
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510... 29 4.9
12_01_0321 + 2447726-2447790,2448114-2448320,2449259-2449392,244... 29 6.5
06_01_0922 - 7113781-7113942,7114093-7114235,7115305-7115506,711... 28 8.6
>07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061
Length = 98
Score = 70.9 bits (166), Expect = 1e-12
Identities = 36/59 (61%), Positives = 42/59 (71%)
Frame = +2
Query: 305 GEVVAVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 481
G+VVAVGPG R ++G IPV + GD VLLPEYGG +V L EKEY LFRE DIL +
Sbjct: 39 GKVVAVGPGERDKDGKLIPVALKEGDTVLLPEYGGLEVKLA-AEKEYLLFREHDILGTL 96
Score = 35.1 bits (77), Expect = 0.075
Identities = 14/32 (43%), Positives = 25/32 (78%)
Frame = +1
Query: 193 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQ 288
+RL+P L+RVL+++ K+AGGI++PE ++
Sbjct: 3 RRLIPSLNRVLVEKLVQPKKSAGGILLPETSK 34
>03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413
Length = 126
Score = 58.4 bits (135), Expect = 7e-09
Identities = 29/46 (63%), Positives = 33/46 (71%)
Frame = +2
Query: 308 EVVAVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEY 445
+VVAVGPG R +G IPV + GD VLLPEYGGT+V L EKEY
Sbjct: 79 KVVAVGPGERDRDGKLIPVSLKEGDTVLLPEYGGTEVKLA--EKEY 122
Score = 35.5 bits (78), Expect = 0.057
Identities = 14/31 (45%), Positives = 24/31 (77%)
Frame = +1
Query: 187 AVKRLVPLLDRVLIKRAEAITKTAGGIVIPE 279
A +RL+P ++RVL+++ K+AGGI++PE
Sbjct: 2 AARRLIPSMNRVLVEKLLQPNKSAGGILLPE 32
>02_05_0964 -
33133516-33133689,33133780-33133857,33133997-33134152,
33134685-33134864,33135516-33135695
Length = 255
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/57 (43%), Positives = 33/57 (57%)
Frame = +2
Query: 305 GEVVAVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 475
G VVAVGPG E G IP+ VS G VL +Y G++ +D Y + R SD++A
Sbjct: 197 GTVVAVGPGPLDEEGKRIPLSVSAGSTVLYSKYAGSEFK-GSDGTSYIVLRVSDLMA 252
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1
Query: 199 LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSK 294
L PL DRVL+K A KT GGI++P AQSK
Sbjct: 64 LKPLADRVLVKIKSAEQKTTGGILLPSAAQSK 95
Score = 36.7 bits (81), Expect = 0.025
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1
Query: 193 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSK 294
K + PL DRVLIK AEA KT GG+++ E + K
Sbjct: 160 KDMKPLSDRVLIKVAEAEDKTPGGLLLTETTKEK 193
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 42.3 bits (95), Expect = 5e-04
Identities = 20/57 (35%), Positives = 35/57 (61%)
Frame = +2
Query: 305 GEVVAVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 475
G V AVGPG E+G P+ ++ G+ V+ +Y G++ + ++ EY + R SD++A
Sbjct: 188 GTVTAVGPGPLVEDGSRKPLSITPGNTVMYSKYAGSE--FKGEDGEYIVLRVSDVMA 242
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +1
Query: 190 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSK 294
VK L PL DRVLIK AEA KTAGG+++ + + K
Sbjct: 150 VKDLKPLNDRVLIKVAEAEEKTAGGLLLTQATKEK 184
Score = 34.3 bits (75), Expect = 0.13
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +1
Query: 205 PLLDRVLIKRAEAITKTAGGIVIPEKAQSK 294
PL DRVL+K + KT GGI++P QSK
Sbjct: 57 PLGDRVLVKIKTSDDKTVGGILLPTSVQSK 86
>06_01_0676 +
4945361-4945531,4945632-4945811,4947145-4947300,
4947460-4947537,4964041-4964214
Length = 252
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +2
Query: 305 GEVVAVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 475
G VVAVGPG + G P+ VS G V+ +Y G++ D Y + R SD++A
Sbjct: 194 GTVVAVGPGPLDDEGKRQPLSVSAGSTVMYSKYAGSEFK-GADGTNYIVLRVSDVMA 249
Score = 40.7 bits (91), Expect = 0.002
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +1
Query: 190 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSK 294
VK + PL DRVLIK AEA KTAGG+++ E + K
Sbjct: 156 VKDMKPLNDRVLIKVAEAEDKTAGGLILTETTKEK 190
Score = 38.7 bits (86), Expect = 0.006
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1
Query: 199 LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSK 294
L PL DRVL+K A KT GGI++P AQSK
Sbjct: 61 LKPLGDRVLVKLGAAEEKTVGGILLPSTAQSK 92
>10_08_0968 +
21933627-21933785,21933893-21933943,21934094-21934129,
21935011-21935076,21935163-21935210,21936424-21936453,
21936651-21936719
Length = 152
Score = 33.5 bits (73), Expect = 0.23
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 293 RVLHGEVVAVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLF-RESDI 469
R L GE+++VG +V G KVL + +V L DEK H F RESD+
Sbjct: 99 RYLMGEILSVGADVN---------EVEAGKKVLFSDINAYEVDLGTDEK--HCFCRESDL 147
Query: 470 LAKIE 484
LA +E
Sbjct: 148 LAVVE 152
>12_01_0618 -
5099021-5099668,5099701-5100221,5100311-5100352,
5100905-5100962
Length = 422
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 168 KNRNGQCSKTIGSSSGPCP 224
K++N +C KT+ SSSGPCP
Sbjct: 236 KDKN-ECLKTMRSSSGPCP 253
>12_01_0321 +
2447726-2447790,2448114-2448320,2449259-2449392,
2449481-2449668,2450204-2450359
Length = 249
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 423 RLTLVPPYSGRRTLSPTLT*TGMKSPFSFRAPGPT 319
R +V PY+ RR++ P + +G+K P + PT
Sbjct: 91 RFLIVSPYAARRSIMPKIKTSGVKYPDGWELIEPT 125
>06_01_0922 -
7113781-7113942,7114093-7114235,7115305-7115506,
7115590-7115685,7117053-7117139,7117237-7117638
Length = 363
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 299 LHGEVVAVGPGARKENGDF-IPVQVSVGDKVLLP 397
+HGEVV V PG + D+ V V VG ++++P
Sbjct: 78 VHGEVVQVTPGGEEHCYDYDYDVDVPVGAELVMP 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,476,567
Number of Sequences: 37544
Number of extensions: 309456
Number of successful extensions: 801
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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