Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_K09
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical ...    70   2e-12
AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical...    29   3.3  
Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping ...    28   7.7  

>AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.10 protein.
          Length = 108

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 33/60 (55%), Positives = 43/60 (71%)
 Frame = +2

Query: 293 RVLHGEVVAVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDIL 472
           +VL   VV+ G G R E G+ + + V  GD+VLLPEYGGTKV +E  +KEY +FRESD+L
Sbjct: 47  KVLEATVVSAGAGLRNEKGELVALTVKPGDRVLLPEYGGTKVVVE--DKEYSIFRESDLL 104



 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +1

Query: 181 ANAVKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSK 294
           +N +K   PL DRVL++R  A TKT GGI++PEK+Q K
Sbjct: 10  SNVLKTFKPLYDRVLVERVAAETKTKGGIMLPEKSQGK 47


>AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical
           protein F37C4.1 protein.
          Length = 612

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 481 NFRQ-YVRLSEEMIFFLIIFKAYFSTAVFWKKNFITHTNLNGDEVS 347
           NF + Y+RLS   I  L++   + +  V  K   + H N +G ++S
Sbjct: 288 NFEKWYLRLSSTSIGLLVVALFFINIVVINKDQILDHVNFSGKDIS 333


>Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical
           protein W05E10.1 protein.
          Length = 484

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 484 FNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKK 389
           FN   Y  +S EM+ FLII     ST +FWK+
Sbjct: 434 FNSSGYTWVSVEMLTFLII--GALSTCIFWKQ 463


>Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical
           protein C03D6.3b protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 400 FWKKNFITHTNLNGDEVSIFFSGSRTDRYYF 308
           F      +H +L+G ++ ++   + TDRYYF
Sbjct: 43  FHPAEVFSHPHLHGKKIGLWIDLTNTDRYYF 73


>Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical
           protein C03D6.3a protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 400 FWKKNFITHTNLNGDEVSIFFSGSRTDRYYF 308
           F      +H +L+G ++ ++   + TDRYYF
Sbjct: 55  FHPAEVFSHPHLHGKKIGLWIDLTNTDRYYF 85


>AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping
           enzyme protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 400 FWKKNFITHTNLNGDEVSIFFSGSRTDRYYF 308
           F      +H +L+G ++ ++   + TDRYYF
Sbjct: 43  FHPAEVFSHPHLHGKKIGLWIDLTNTDRYYF 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,915,945
Number of Sequences: 27780
Number of extensions: 262499
Number of successful extensions: 718
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)