Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_K08
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0146 + 26969011-26969995,26970878-26970930                       30   2.8  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   3.6  
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950...    29   3.6  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   4.8  
12_02_0299 - 17051570-17052474,17053542-17053755                       29   6.4  
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526...    29   6.4  
11_04_0009 - 12132781-12133272                                         28   8.4  

>01_06_0146 + 26969011-26969995,26970878-26970930
          Length = 345

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/93 (22%), Positives = 24/93 (25%)
 Frame = +2

Query: 536 PXXPXXPXXXPPXXXXXXXXPGAGXPPXXXVIGXPTXXXTWXXXGPPPXKXRXKNXFXXX 715
           P  P  P   PP        P    P      G P+         PPP      +     
Sbjct: 36  PISPQNPTPPPPPLPASAAAPTTPSPNHS---GDPSRPIPSQAPAPPPPPTADPSPPLPH 92

Query: 716 NXXXPXPXXGXPXXPXXTXPXPPPXXXXFPXXP 814
           +   P P    P  P    P PP      P  P
Sbjct: 93  DNRTPQPRAAPPPAPAPDQPAPPSPPPSLPPSP 125


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +2

Query: 728 PXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPPP 865
           P P    P  P    P PPP     P  P         P    PPP
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPP 356


>02_02_0369 -
           9505330-9505652,9507262-9507532,9507649-9507690,
           9508416-9508458,9508853-9508860
          Length = 228

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 26/111 (23%), Positives = 28/111 (25%), Gaps = 2/111 (1%)
 Frame = +2

Query: 536 PXXPXXPXXXPPXXXXXXXX--PGAGXPPXXXVIGXPTXXXTWXXXGPPPXKXRXKNXFX 709
           P  P  P   PP          PGA   P     G P    +      PP     +    
Sbjct: 102 PGAPLMPGVRPPILPAPGIPGYPGAPNVPTMPQTGAPPG--SMPPGSMPPGSMPMQMAPL 159

Query: 710 XXNXXXPXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPP 862
                 P P  G P  P      PP      P  P G       P    PP
Sbjct: 160 PRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPPQPAGPTSGAPPPVSAPPP 210


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = +2

Query: 749  PXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPPP 865
            P  P  T P PPP     P  P         P    PPP
Sbjct: 1162 PSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPP 1200


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 749 PXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPP 862
           P  P  T P PPP    FP  P         P    PP
Sbjct: 245 PPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPP 282


>08_01_0600 -
           5262573-5262773,5262850-5262952,5263050-5263180,
           5263263-5263312,5265266-5265725,5266349-5266708
          Length = 434

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +1

Query: 565 PPPPXXXXXXPGGXGSPXXXGXWXPHXXKXLXXXGPPP 678
           PPPP       GG G+P   G   P          PPP
Sbjct: 3   PPPPPPQAGVAGGGGAPPQWGAIPPPVPHQQQQYAPPP 40


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 220 RSSTWAREQRWSFSKPAPERRRRIGSLR 137
           R   W RE+R S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,459,725
Number of Sequences: 37544
Number of extensions: 426047
Number of successful extensions: 984
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)