Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_K08
(867 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97634-12|CAI95599.1| 195|Homo sapiens non-metastatic cells 4, ... 34 0.77
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 32 3.1
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 32 3.1
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 32 3.1
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 31 7.2
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 31 7.2
BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, mem... 30 9.5
AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, mem... 30 9.5
AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein pro... 30 9.5
>Z97634-12|CAI95599.1| 195|Homo sapiens non-metastatic cells 4,
protein expressed in protein.
Length = 195
Score = 33.9 bits (74), Expect = 0.77
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -3
Query: 292 GPRSPGPL*RCHHGCSCPFFQFS*RSSTWAREQRWSFSKPAPERRRRIGSL 140
GPR+PGP HG P R +W RE+ KP +RR +G +
Sbjct: 16 GPRAPGPSLLVRHGSGLPPSALK-RGPSWTRERTLVAVKPDGVQRRLVGDV 65
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 31.9 bits (69), Expect = 3.1
Identities = 30/119 (25%), Positives = 31/119 (26%), Gaps = 9/119 (7%)
Frame = +2
Query: 536 PXXPXXPXXXPPXXXXXXXXPGA--GXPPXXXVIGXPTXXXTWXXXGPPPXKXRXKNXFX 709
P P PP P G PP V+ P PPP F
Sbjct: 226 PPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFG 285
Query: 710 XX-------NXXXPXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPPP 865
P P G P P PPP FP P G P PPP
Sbjct: 286 QPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPG---PLGPPLTLAPPP 341
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 31.9 bits (69), Expect = 3.1
Identities = 30/119 (25%), Positives = 31/119 (26%), Gaps = 9/119 (7%)
Frame = +2
Query: 536 PXXPXXPXXXPPXXXXXXXXPGA--GXPPXXXVIGXPTXXXTWXXXGPPPXKXRXKNXFX 709
P P PP P G PP V+ P PPP F
Sbjct: 226 PPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFG 285
Query: 710 XX-------NXXXPXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPPP 865
P P G P P PPP FP P G P PPP
Sbjct: 286 QPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPG---PLGPPLTLAPPP 341
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 31.9 bits (69), Expect = 3.1
Identities = 30/119 (25%), Positives = 31/119 (26%), Gaps = 9/119 (7%)
Frame = +2
Query: 536 PXXPXXPXXXPPXXXXXXXXPGA--GXPPXXXVIGXPTXXXTWXXXGPPPXKXRXKNXFX 709
P P PP P G PP V+ P PPP F
Sbjct: 226 PPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFG 285
Query: 710 XX-------NXXXPXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPPP 865
P P G P P PPP FP P G P PPP
Sbjct: 286 QPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPG---PLGPPLTLAPPP 341
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 30.7 bits (66), Expect = 7.2
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +2
Query: 728 PXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPPP 865
P P G P P PPP FP P G P PPP
Sbjct: 226 PVPGYGPPPGPPPPQQGPPPPPGPFPPRPPG---PLGPPLTLAPPP 268
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 30.7 bits (66), Expect = 7.2
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +2
Query: 728 PXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPPP 865
P P G P P PPP FP P G P PPP
Sbjct: 336 PVPGYGPPPGPPPPQQGPPPPPGPFPPRPPG---PLGPPLTLAPPP 378
>BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.5
Identities = 26/108 (24%), Positives = 29/108 (26%), Gaps = 1/108 (0%)
Frame = +2
Query: 545 PXXPXXXPPXXXXXXXXPGAGXPPXXXVIGXPTXXXTWXXXGP-PPXKXRXKNXFXXXNX 721
P P PP P A PP +IG P P P + +
Sbjct: 302 PAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPHPDF 361
Query: 722 XXPXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPPP 865
P P P T P PP GG P PPP
Sbjct: 362 AAPPPPPPPPAADYPTLPPPP-----LSQPTGGAPPPPPPPPPPGPPP 404
>AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.5
Identities = 26/108 (24%), Positives = 29/108 (26%), Gaps = 1/108 (0%)
Frame = +2
Query: 545 PXXPXXXPPXXXXXXXXPGAGXPPXXXVIGXPTXXXTWXXXGP-PPXKXRXKNXFXXXNX 721
P P PP P A PP +IG P P P + +
Sbjct: 302 PAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPHPDF 361
Query: 722 XXPXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPPP 865
P P P T P PP GG P PPP
Sbjct: 362 AAPPPPPPPPAADYPTLPPPP-----LSQPTGGAPPPPPPPPPPGPPP 404
>AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein
protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.5
Identities = 26/108 (24%), Positives = 29/108 (26%), Gaps = 1/108 (0%)
Frame = +2
Query: 545 PXXPXXXPPXXXXXXXXPGAGXPPXXXVIGXPTXXXTWXXXGP-PPXKXRXKNXFXXXNX 721
P P PP P A PP +IG P P P + +
Sbjct: 302 PAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPHPDF 361
Query: 722 XXPXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPPP 865
P P P T P PP GG P PPP
Sbjct: 362 AAPPPPPPPPAADYPTLPPPP-----LSQPTGGAPPPPPPPPPPGPPP 404
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,997,971
Number of Sequences: 237096
Number of extensions: 2504770
Number of successful extensions: 4563
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4305
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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