Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_K08
(867 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 35 0.087
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 35 0.087
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 35 0.087
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.81
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.81
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.81
AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family ... 29 5.7
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.7 bits (76), Expect = 0.087
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +2
Query: 671 PPPXKXRXKNXFXXXNXXXPXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXX 850
PPP + P P G P P P PPP P GG
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297
Query: 851 XXPPP 865
PPP
Sbjct: 298 PPPPP 302
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/94 (25%), Positives = 26/94 (27%)
Frame = +2
Query: 524 KXKXPXXPXXPXXXPPXXXXXXXXPGAGXPPXXXVIGXPTXXXTWXXXGPPPXKXRXKNX 703
+ K P PP G+G PP G P T PPP
Sbjct: 226 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT---GSPPP-------- 274
Query: 704 FXXXNXXXPXPXXGXPXXPXXTXPXPPPXXXXFP 805
P P G P P P PPP P
Sbjct: 275 -PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 307
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/84 (25%), Positives = 22/84 (26%)
Frame = +2
Query: 536 PXXPXXPXXXPPXXXXXXXXPGAGXPPXXXVIGXPTXXXTWXXXGPPPXKXRXKNXFXXX 715
P P PP P G PP G P PPP +
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG------SPP 308
Query: 716 NXXXPXPXXGXPXXPXXTXPXPPP 787
P P G P T PPP
Sbjct: 309 TGSLPPPQAGGSPPPAGTGSPPPP 332
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.7 bits (76), Expect = 0.087
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +2
Query: 671 PPPXKXRXKNXFXXXNXXXPXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXX 850
PPP + P P G P P P PPP P GG
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318
Query: 851 XXPPP 865
PPP
Sbjct: 319 PPPPP 323
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/94 (25%), Positives = 26/94 (27%)
Frame = +2
Query: 524 KXKXPXXPXXPXXXPPXXXXXXXXPGAGXPPXXXVIGXPTXXXTWXXXGPPPXKXRXKNX 703
+ K P PP G+G PP G P T PPP
Sbjct: 247 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT---GSPPP-------- 295
Query: 704 FXXXNXXXPXPXXGXPXXPXXTXPXPPPXXXXFP 805
P P G P P P PPP P
Sbjct: 296 -PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 328
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/84 (25%), Positives = 22/84 (26%)
Frame = +2
Query: 536 PXXPXXPXXXPPXXXXXXXXPGAGXPPXXXVIGXPTXXXTWXXXGPPPXKXRXKNXFXXX 715
P P PP P G PP G P PPP +
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG------SPP 329
Query: 716 NXXXPXPXXGXPXXPXXTXPXPPP 787
P P G P T PPP
Sbjct: 330 TGSLPPPQAGGSPPPAGTGSPPPP 353
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.7 bits (76), Expect = 0.087
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +2
Query: 671 PPPXKXRXKNXFXXXNXXXPXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXX 850
PPP + P P G P P P PPP P GG
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303
Query: 851 XXPPP 865
PPP
Sbjct: 304 PPPPP 308
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/94 (25%), Positives = 26/94 (27%)
Frame = +2
Query: 524 KXKXPXXPXXPXXXPPXXXXXXXXPGAGXPPXXXVIGXPTXXXTWXXXGPPPXKXRXKNX 703
+ K P PP G+G PP G P T PPP
Sbjct: 232 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT---GSPPP-------- 280
Query: 704 FXXXNXXXPXPXXGXPXXPXXTXPXPPPXXXXFP 805
P P G P P P PPP P
Sbjct: 281 -PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 313
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/84 (25%), Positives = 22/84 (26%)
Frame = +2
Query: 536 PXXPXXPXXXPPXXXXXXXXPGAGXPPXXXVIGXPTXXXTWXXXGPPPXKXRXKNXFXXX 715
P P PP P G PP G P PPP +
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG------SPP 314
Query: 716 NXXXPXPXXGXPXXPXXTXPXPPP 787
P P G P T PPP
Sbjct: 315 TGSLPPPQAGGSPPPAGTGSPPPP 338
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.81
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +2
Query: 728 PXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPPP 865
P P G P P P PPP P GG P PPP
Sbjct: 729 PPPPGGLP--PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.81
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +2
Query: 728 PXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPPP 865
P P G P P P PPP P GG P PPP
Sbjct: 729 PPPPGGLP--PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.81
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +2
Query: 728 PXPXXGXPXXPXXTXPXPPPXXXXFPXXPGGXXXXXXXPXXXXPPP 865
P P G P P P PPP P GG P PPP
Sbjct: 312 PPPPGGLP--PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
>AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family
protein 31 protein.
Length = 747
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 383 YILKLTSRLNNTSIYGARFKYHFPIALAEPRTSIAGPALTMP 258
++L L+ L S Y K HFP TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,843,476
Number of Sequences: 27780
Number of extensions: 353768
Number of successful extensions: 861
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -