Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_K04
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    31   0.21 
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   2.0  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    27   2.6  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.0  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   7.9  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   7.9  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   7.9  

>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +2

Query: 602 TRSAQPQRLFSSTP---SISXGAWSSKFDERLTSDRDFYVSKDKTIKVPMMFXRGDYNME 772
           T  + P  +FS+ P   S+     S      L   R   +S  +++  P  F + +YN +
Sbjct: 173 TFGSNPNSVFSAQPTEPSVEPPTSSFPIQPPLPPSRSISISNPQSLSFPSSFDQSNYNFQ 232

Query: 773 RAQYLMAN*L-KYLTRANHP 829
            A     N L ++L R+N P
Sbjct: 233 AASTPQFNPLIEHLRRSNSP 252


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 364 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 459
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/50 (22%), Positives = 28/50 (56%)
 Frame = +2

Query: 692 SDRDFYVSKDKTIKVPMMFXRGDYNMERAQYLMAN*LKYLTRANHPSLIV 841
           SD  ++ +    +K P++F   + N E    +++  L+ + ++ +PS++V
Sbjct: 173 SDAGYFYTDASPLKTPLVFPVPENNKEIEHEVVSEILELIEKSKNPSILV 222


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 149 NLSNVLKNGNDNFTARMFTEVVKNNPGXKHCPLGI 253
           N  N+LK  ND   AR +TE V      K  P GI
Sbjct: 56  NSQNLLKQLNDEMKARKYTETVATFSSLK--PFGI 88


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 76  DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 174
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
 Frame = +2

Query: 620 QRLFSSTPSISX-------GAWS-SKFDERLTSDRDFYVSKDKTIKV 736
           Q +  STPS S        G W  + FDE + S  D +V K+K I++
Sbjct: 363 QHILESTPSNSETITVDPEGNWKLNTFDEPVESSEDEFVPKEKVIEL 409


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 523 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 612
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,520
Number of Sequences: 5004
Number of extensions: 63608
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)