Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_K02
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.085
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.20 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.8  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   2.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   4.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.085
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +2

Query: 359 PPPTXTXKXXXPPLATXPPXRXARXPXPPPPXPPXLS 469
           PPP        PP    PP      P PPPP PP +S
Sbjct: 752 PPPAPIMGGPPPP--PPPPGVAGAGPPPPPPPPPAVS 786



 Score = 29.5 bits (63), Expect = 0.60
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +2

Query: 359 PPPTXTXKXXXPPLATXPPXRXARXPXPPPPXPPXLSFXXP 481
           PPP        P     PP        PPPP PP ++   P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 330 PPPXLXXXXTPPPPQPXKXXXPPXPPXXXP 419
           P P +     PPPP       PP PP   P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 330 PPPXLXXXXTPPPPQPXKXXXPPXPPXXXP 419
           PP  +     PPPP P      P PP   P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 325 PPPXPXXWXXKPPPHXNPKXXKXPPXHPPXXP 420
           PPP P      PPP         PP  PP  P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 720 PXXNNPXTXXXXPVPAXXXPPPPNXPPP 803
           P    P      P  A   PPPP  PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 30/114 (26%), Positives = 34/114 (29%), Gaps = 3/114 (2%)
 Frame = +2

Query: 149 PPPLPPXXXXKKXSXFXPPPXXXXKXXKXRXXGXXPXXGGXVRXPPXXKKXXXXGGGXXX 328
           PPP PP       S   PP                P  G   R PP              
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA--PSTG---RQPPPLSSSRAVSN-PPA 390

Query: 329 PPXXLXGXXNP--PPTXTX-KXXXPPLATXPPXRXARXPXPPPPXPPXLSFXXP 481
           PP  + G   P  PP     +   PP+ T P    +  P  PP  PP L    P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +2

Query: 329 PPXXLXGXXNPPPTXTXKXXXPPLATXPPXRXARXPXPPPPXP 457
           PP    G    PP        PPL    P      P  P P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +2

Query: 359  PPPTXTXKXXXPPLATXPPXRXARXPXPPPPXPP 460
            PP         PP++  PP      P  PP  PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 359  PPPTXTXKXXXPPLATXPPXRXARXPXPPPP 451
            PPP+       PP A  PP   +  P  P P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +2

Query: 332  PXXLXGXXNPPPTXTXKXXXPPLATXPPXRXARXPXPPPPXP 457
            P  +     PPP  +     PP  + PP        PPPP P
Sbjct: 1699 PPQMSAPTPPPPPMSV----PPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +1

Query: 325  PPPXPXXWXXKPPPHXNPKXXKXPPXHPPXXP 420
            P P P      PPP   P     P   PP  P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 465 RXGGXGGGGXGXRAXRXGGXVARGG 391
           R G  GGG  G R  R G   ARGG
Sbjct: 32  RGGARGGGRGGARGGRGGRGGARGG 56


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 756 PVPAXXXPPPPNXPP 800
           P+PA   PPPP  PP
Sbjct: 234 PLPAPPPPPPPTLPP 248



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 356 NPPPTXTXKXXXPPLATXPPXRXARXPXPPPPXPP 460
           +PPP+        P  + P       P PPPP PP
Sbjct: 166 SPPPSFQPPSAAAPATSLPSDYN---PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 392 PPLATXPPXRXARXPXPPPPXPPXL 466
           PP  T  P +    P PPPP PP L
Sbjct: 224 PP--TYTPKQADPLPAPPPPPPPTL 246


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 359 PPPTXTXKXXXPPLATXPPXRXARXPXPP 445
           PPPT +     P +A+ PP +      PP
Sbjct: 910 PPPTASMTASAPAIASPPPPKVGETYHPP 938


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.152    0.560 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,542
Number of Sequences: 5004
Number of extensions: 20725
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)