Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_K01
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.17 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   2.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 428 PPXQPPXXPPPPPPXXRPP 484
           PP  PP  PPPPPP   PP
Sbjct: 5   PPGNPP--PPPPPPGFEPP 21



 Score = 31.1 bits (67), Expect = 0.23
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 425 PPPXQPPXXPPPPPP 469
           PP  +PP  PPPPPP
Sbjct: 15  PPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 425 PPPXQPPXXPPPPPPXXRPP 484
           PPP  PP   PP  P   PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 425 PPPXQPPXXPPPPPPXXRPP 484
           PPP  P   PP  PP   PP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 404 GEXXEXXPPPXQPPXXPPPPPP 469
           G      PPP   P   PPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPP 28


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 483 GGRXXGGGGGGXXGGWXGG 427
           GG   GG GGG  GG+ GG
Sbjct: 155 GGNSRGGFGGGSRGGFGGG 173


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 425 PPPXQPPXXPPPPPPXXRPP 484
           P    P   PPPPPP   PP
Sbjct: 229 PKQADPLPAPPPPPPPTLPP 248


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 398 VQGEXXEXXPPPXQPPXXPPPPPP 469
           + G      PPP      PPPPPP
Sbjct: 757 IMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 425 PPPXQPPXXPPPPPP 469
           PPP      PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPP 766


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 425  PPPXQPPXXPPPPPPXXRPP 484
            P P  PP  PPPP P    P
Sbjct: 1722 PMPAGPPSAPPPPLPASSAP 1741


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 425 PPPXQPPXXPPPPPPXXRP 481
           P P Q    PPPPPP   P
Sbjct: 352 PLPPQGRSAPPPPPPRSAP 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 902,303
Number of Sequences: 5004
Number of extensions: 8402
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)