Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J24
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.31 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   8.8  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    26   8.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 25/104 (24%), Positives = 31/104 (29%), Gaps = 1/104 (0%)
 Frame = +3

Query: 291 GGGXXXXGGXXPPPPPPXXXXXXXPXKKKXR-XPPPQNXKXPPHXXXXKQXPPPSPXXXS 467
           G G        PPPPP        P   + R  PPP   +  P     +Q PP S     
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP--STGRQPPPLSSSRAV 385

Query: 468 KXXXXXKKXXRXXTHPPRXPXGGXAPQXSPXPPXTPXXSGSXXP 599
                        + P   P G  +   +P  P  P    S  P
Sbjct: 386 SNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429



 Score = 29.5 bits (63), Expect = 0.72
 Identities = 23/94 (24%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
 Frame = +3

Query: 324 PPPPPPXXXXXXXPXKKKXRXPPPQNXKXPPHXXXXKQXPPPSPXXXSKXXXXXKKXXRX 503
           PP PPP       P     R   P +     +       PPPS    +      KK    
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313

Query: 504 XTHPPR-----XPXGGXAPQXSPXPPXTPXXSGS 590
              P R      P G  +   S  PP  P  S +
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 297 GXXXXGGXXPPPPPP 341
           G    GG  PPPPPP
Sbjct: 298 GDSANGGLPPPPPPP 312


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 498 RXXTHPPRXPXGGXAPQXSPXPPXTPXXSGS 590
           R     PR P G   P+ S  PP T    GS
Sbjct: 141 RSGRQSPRTPIGSTTPKSSHSPPSTRKRRGS 171


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 15/48 (31%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
 Frame = +3

Query: 327 PPPPPXXXXXXXPXKKKXRXPPPQ-----NXKXPPHXXXXKQXPPPSP 455
           PPPPP       P       PPP          PP        PPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 312 GGXXPPPPPPXXXXXXXPXKKKXRXPPP 395
           GG  PPPPPP       P       PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP---PPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.140    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,896
Number of Sequences: 5004
Number of extensions: 19657
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)