Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J20
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    30   0.36 
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    28   1.5  
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    27   4.4  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   4.4  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    26   7.8  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.8  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 241 INYLF-YILHPRIRNEHTQITLALTTNILID 152
           INYL   IL+P+ RNE    T +LTT I +D
Sbjct: 658 INYLISLILYPKARNESWTNTESLTTGITVD 688


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -1

Query: 753 LMXTPPRTATGCSRHRHGSRAGP---CXDIR*RLH 658
           L  +PPR    C+  RHGSRA     C   R R H
Sbjct: 23  LSTSPPRRWRNCTLQRHGSRASADEFCEQYRSRSH 57


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 172 LMLVLFVCVHCEFEGEE 222
           +M +++VCVHC F  EE
Sbjct: 96  MMTLIYVCVHCGFAFEE 112


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 639 ARPRSWXQCLLRLIXPGERDALFTRIHE 556
           A P +W  CLL     GE + LFTRI E
Sbjct: 739 AIPDTWELCLLPGHRIGEPEYLFTRIDE 766


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 628 TRTSSSLAAPMQASTNIXTWSCSATVTMSRTSSG 729
           T TSSS A+P  +S++    S S+++  S +SSG
Sbjct: 105 TLTSSSSASPTSSSSSHALSSSSSSLVASSSSSG 138


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +1

Query: 505 PKTGQKAWDKCIE----YQEQLVYPCEKGVALTGXDQPQ*ALXPRTRTSSSLAAPMQAST 672
           P T   +W++ I     Y+   +YP    +     ++P   +   +  ++SL +PM +S 
Sbjct: 214 PGTSDTSWNQPIHLITYYRYLRLYPNSTCIVYQSSNEPNDVVRNFSVQNTSLFSPMSSSP 273

Query: 673 NIXTWSCSATVTMSRTSSG 729
                + + T + S T SG
Sbjct: 274 MFSNGNVALTGSWSMTPSG 292


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 259 YSCRLLINYLFYILHPRIRNEHTQITLALTTNILI 155
           Y C+ L+N + Y+++P IR + T   L L   +L+
Sbjct: 13  YYCKRLLNSVTYMMYPLIR-KRTMKKLLLIVGLLL 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,541
Number of Sequences: 5004
Number of extensions: 58819
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)