Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_J19
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.28
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.4
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 27 3.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.4
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 4.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.0
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 7.9
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.28
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPPXXPPXPXXP 682
PP N PP PP PP PP P P
Sbjct: 5 PPGNPPPPPPPPGFE-PPSQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAPXP 721
PP ++ PP P PP PP PP P P
Sbjct: 1192 PPPSEAPPVPKPSVGVPP-VPPPSTAPPVPTPSAGLPPVP 1230
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +2
Query: 566 PKLGXXPAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P +G P PP + PP P PP P PP
Sbjct: 1203 PSVGVPPV----PPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 620 PPXKPPXXXXPPXXPPXPXXPP 685
PP P PP PP P PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPP 1728
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Frame = +2
Query: 602 PPXNKXPPXK-PPXXXXPPXXPPXP 673
PP + PP PP PP PP P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 213 LLPFIYRDSSVKLLIYIQTRFNLFV 139
L+P RDSSV +++Y T N FV
Sbjct: 76 LIPSYIRDSSVAIIVYDITNHNSFV 100
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +2
Query: 557 VCFPKLGXXPAXXFSPPXNKXPPXKPPXXXXPPXXPPXP 673
V P P F PP P P PP PP P
Sbjct: 158 VSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/34 (32%), Positives = 13/34 (38%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P+ +PP P PP P PP P P
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 298 NHFIWILXVYVCSKTYTAY 242
++ IW+ VY+ KTYT+Y
Sbjct: 19 SNMIWLYEVYMLYKTYTSY 37
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = +2
Query: 554 LVCFPKLGXXPAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP--XXXXXRXXAPXP 721
+V P P +P PP PP PP P PP R AP P
Sbjct: 740 IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Frame = +2
Query: 614 KXPPXKPPXXXXP-PXXPPXPXXPPXXXXXRXXAPXP 721
K PP PP P P P P PP P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 146 YLCFGRSFLLWTKSLNIRVYLFT 78
Y F R + +W KSL I V LFT
Sbjct: 40 YFHFRRFWTIWLKSLVIMVLLFT 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,819
Number of Sequences: 5004
Number of extensions: 35414
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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