Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_J19
(863 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.35
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.4
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 31 1.4
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 31 1.4
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 31 1.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.4
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 3.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.3
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 4.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.3
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z81585-5|CAM84811.1| 71|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 28 7.5
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 7.5
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 28 7.5
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 28 7.5
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 7.5
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z83114-7|CAJ76943.1| 525|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z83114-6|CAB63235.1| 589|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z81533-8|CAB04332.1| 917|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 28 9.9
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 9.9
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 28 9.9
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 9.9
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 28 9.9
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 28 9.9
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 32.7 bits (71), Expect = 0.35
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +2
Query: 596 FSPPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAPXP 721
F PP PP PP PP PP P P + AP P
Sbjct: 55 FCPPPPMCPPPPPPPP--PPMCPPPPPPMPSYSPCQSYAPAP 94
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +2
Query: 554 LVCFPKLGXXPAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
L C P P PP PP PP PP PP P P
Sbjct: 43 LPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSP 86
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +2
Query: 557 VCFPKLGXXPAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
+C P P PP PP P PP P P PP
Sbjct: 37 MCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPP 79
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPP--XXPPXPXXPPXXXXXRXXAPXP 721
PP PP PP PP PP P PP P P
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = +2
Query: 566 PKLGXXPAXXFSPPXNKXPPXKPPXXXXPP-XXPPXPXXPPXXXXXRXXAPXP 721
P G P PP PP PP PP P P PP P P
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 566 PKLGXXPAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P G P PP P PP PP PP P P
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAPXP 721
PP + PP PP PP P P PP + P P
Sbjct: 752 PPISGGPPPPPP----PPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAPXP 721
P PP P PP PP PP PP P P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPP--XXPPXPXXPPXXXXXRXXAPXP 721
PP PP PP PP PP P PP P P
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = +2
Query: 566 PKLGXXPAXXFSPPXNKXPPXKPPXXXXPP-XXPPXPXXPPXXXXXRXXAPXP 721
P G P PP PP PP PP P P PP P P
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 566 PKLGXXPAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P G P PP P PP PP PP P P
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAPXP 721
PP + PP PP PP P P PP + P P
Sbjct: 752 PPISGGPPPPPP----PPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAPXP 721
P PP P PP PP PP PP P P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 596 FSPPXNKXPPXKPPXXXXPPXXPPXP 673
F PP PP PP PP PP P
Sbjct: 64 FCPPPPICPPPPPPPMPCPPPPPPMP 89
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +2
Query: 557 VCFPKLGXXPAXXFSPPXNKXPPXKPPXXXXPPXXP-PXPXXP 682
VC P PA PP PP PP PP P P P P
Sbjct: 53 VC-PPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSCP 94
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAP 715
PP PP PP PP P PP R P
Sbjct: 57 PPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSCP 94
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +2
Query: 566 PKLGXXPAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P L P +PP PP PP P PP P PP
Sbjct: 73 PPLPPPPLPLSNPPAKPTPPPPPPKPTIRP--PPIPASPP 110
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +2
Query: 566 PKLGXXPAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P L P +PP PP PP P PP P PP
Sbjct: 295 PPLPPPPLPLSNPPAKPTPPPPPPKPTIRP--PPIPASPP 332
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPP--XXPPXPXXPPXXXXXRXXAPXP 721
PP PP PP PP PP P PP P P
Sbjct: 319 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = +2
Query: 566 PKLGXXPAXXFSPPXNKXPPXKPPXXXXPP-XXPPXPXXPPXXXXXRXXAPXP 721
P G P PP PP PP PP P P PP P P
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 566 PKLGXXPAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P G P PP P PP PP PP P P
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAPXP 721
PP + PP PP PP P P PP + P P
Sbjct: 335 PPISGGPPPPPP----PPGGCPPPPPPPPPGGFKGGPPPP 370
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAPXP 721
P PP P PP PP PP PP P P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 605 PXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P + PP PP PP P P PP
Sbjct: 127 PYQQQPPPPPPPPHYPPPPPHYPPPPP 153
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/48 (29%), Positives = 17/48 (35%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAPXPYT 727
PA +P P P PP PP P PP P P++
Sbjct: 110 PAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPAPHS 157
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +2
Query: 566 PKLGXXPAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAP 715
P G P P PP PP P P P PP R P
Sbjct: 279 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 328
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 620 PPXKPPXXXXPPXXPPXPXXPP 685
PP KPP PP PP P PP
Sbjct: 147 PPPKPPCQKCPP-GPPGPAGPP 167
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +2
Query: 566 PKLGXXPAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAP 715
P G P P PP PP P P P PP R P
Sbjct: 289 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 338
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +2
Query: 596 FSPPX-NKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAPXP 721
F+PP + PP PP PP P PP A P
Sbjct: 785 FTPPSTSSVPPPPPPLPPISSGAPPPPPPPPPGGLMHVAASAP 827
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +2
Query: 596 FSPPX-NKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAPXP 721
F+PP + PP PP PP P PP A P
Sbjct: 785 FTPPSTSSVPPPPPPLPPISSGAPPPPPPPPPGGLMHVAASAP 827
>Z81585-5|CAM84811.1| 71|Caenorhabditis elegans Hypothetical
protein T05E12.8 protein.
Length = 71
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 289 IWILXVYVCSKTYTAY*INRILRPLIVTV 203
I IL + +CS T+T Y I R L P + T+
Sbjct: 22 IIILLIIMCSLTHTVYAIGRALIPSVATL 50
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P PP P PP P PP P PP
Sbjct: 126 PGNPGRPPQQPCDPITPPPCQPCPQGPPGPPGPP 159
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P PP P PP P PP P PP
Sbjct: 93 PGNPGHPPQQPCDPITPPPCQPCPQGPPGPPGPP 126
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P PP P PP P PP P PP
Sbjct: 126 PGNPGRPPQQPCDPITPPPCQPCPQGPPGPPGPP 159
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P PP P PP P PP P PP
Sbjct: 126 PGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPP 159
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPPXXPPXPXXP 682
PP PP P PP PP P P
Sbjct: 497 PPPPPLPPIATPSSVPPPPPPPPPPPP 523
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P PP P PP P PP P PP
Sbjct: 126 PGNPGRPPQQPCEPITPPPWKPCPQGPPGPPGPP 159
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P PP P PP P PP P PP
Sbjct: 126 PGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPP 159
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +2
Query: 569 KLGXXPAXXFSP-PXNKXPPXKPPXXXXPPXXPPXPXXPP 685
KL P +P + PP P PP PP P PP
Sbjct: 331 KLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPPP 370
>Z83114-7|CAJ76943.1| 525|Caenorhabditis elegans Hypothetical
protein K09B11.5b protein.
Length = 525
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/40 (30%), Positives = 15/40 (37%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAPXP 721
PP ++ P +PP P PP P P P P
Sbjct: 485 PPVSQPPVSQPPVSQPPVSQPPVPQHPMTPPPASSARPHP 524
>Z83114-6|CAB63235.1| 589|Caenorhabditis elegans Hypothetical
protein K09B11.5a protein.
Length = 589
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/40 (30%), Positives = 15/40 (37%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPPXXPPXPXXPPXXXXXRXXAPXP 721
PP ++ P +PP P PP P P P P
Sbjct: 549 PPVSQPPVSQPPVSQPPVSQPPVPQHPMTPPPASSARPHP 588
>Z81533-8|CAB04332.1| 917|Caenorhabditis elegans Hypothetical
protein F36G9.13 protein.
Length = 917
Score = 27.9 bits (59), Expect = 9.9
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +2
Query: 113 SIIRTIYRNTNKLKRV*IYINNFTEESR*INGNN*RTKYSVYLVRSVRFAANVNX*DPYK 292
S +R+I R KLK YINNF E S ++G+ +++ V L ++V N +
Sbjct: 487 STVRSI-RILRKLKADSSYINNFNEMSSVLSGS---SQFIVSLRKTVEEYKKDNSSEVII 542
Query: 293 MIKISALNDES 325
+ K++AL D S
Sbjct: 543 LKKLNALKDLS 553
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P PP P PP P PP P PP
Sbjct: 128 PGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPP 161
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
PP P PP P PP P PP
Sbjct: 122 PPKEPCEPITPPPCKPCPEGPPGPAGPP 149
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P PP P PP P PP P PP
Sbjct: 123 PGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPP 156
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P PP P PP P PP P PP
Sbjct: 130 PGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPP 163
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P PP P PP P PP P PP
Sbjct: 123 PGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPP 156
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 602 PPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
PP P PP P PP P PP
Sbjct: 124 PPKEPCEPLTPPPCKPCPEGPPGPAGPP 151
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 584 PAXXFSPPXNKXPPXKPPXXXXPPXXPPXPXXPP 685
P PP P PP P PP P PP
Sbjct: 130 PGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPP 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,394,543
Number of Sequences: 27780
Number of extensions: 234312
Number of successful extensions: 1365
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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